Pre_GI: BLASTP Hits

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Query: NC_004337:3049118:3076961 Shigella flexneri 2a str. 301, complete genome

Start: 3076961, End: 3077560, Length: 600

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:3088907:311800831180083118607600Shigella flexneri 2002017 chromosome, complete genomehypothetical protein6e-117419
NC_004741:3041294:306914030691403069739600Shigella flexneri 2a str. 2457T, complete genomehypothetical protein6e-117419
NC_009800:349592:355726355726356325600Escherichia coli HS, complete genomehypothetical protein6e-117419
NC_004431:279868:285387285387285986600Escherichia coli CFT073, complete genomehypothetical protein1e-106385
NC_007946:1073135:108878510887851089378594Escherichia coli UTI89, complete genomehypothetical protein4e-70263
NC_004431:1119700:113536811353681135961594Escherichia coli CFT073, complete genomehypothetical protein4e-70263
NC_013361:1284579:129868212986821299245564Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein4e-67253
NC_002655:1053082:106625810662581066821564Escherichia coli O157:H7 EDL933, complete genomehypothetical protein4e-67253
NC_002695:1364833:137809313780931378656564Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein4e-67253
NC_002655:1448605:146186514618651462428564Escherichia coli O157:H7 EDL933, complete genomehypothetical protein4e-67253
NC_017328:1075535:108903210890321089595564Shigella flexneri 2002017 chromosome, complete genomehypothetical protein5e-66250
NC_010498:2278306:229595022959502296513564Escherichia coli SMS-3-5, complete genomehypothetical protein4e-66250
NC_011745:291422:303545303545304108564Escherichia coli ED1a chromosome, complete genomehypothetical protein9e-66249
NC_013353:3853082:388325738832573883820564Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein5e-65246
AP010958:3853082:388325738832573883820564Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved predicted protein5e-65246
NC_011601:1114104:112681211268121127375564Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein3e-64244
NC_011353:1307106:132171513217151322242528Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein5e-63240
NC_013008:1307392:132200113220011322528528Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein5e-63240
NC_013364:1257801:127193812719381272465528Escherichia coli O111:H- str. 11128, complete genomehypothetical protein5e-63240
NC_012917:3241196:325916132591613259742582Pectobacterium carotovorum subsp. carotovorum PC1, complete genomehypothetical protein2e-30131
NC_011283:4966471:500459950045995005177579Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein1e-26119
NC_010465:3431500:343178834317883432375588Yersinia pseudotuberculosis YPIII, complete genomehypothetical protein1e-26119
NC_011415:308825:316315316315316893579Escherichia coli SE11 chromosome, complete genomehypothetical protein2e-26118
NC_014618:4114004:413312841331284133709582Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein6e-26117
NC_015663:1:262252622526863639Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein9e-26116
NC_015663:549425:569816569816570412597Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein3e-25114
NC_011083:4547825:457880445788044579370567Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein7e-23107
AP010958:5272863:528136552813655281940576Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein5e-23107
NC_013353:5272863:528136552813655281940576Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein5e-23107
NC_008253:3941938:397397239739723974538567Escherichia coli 536, complete genomehypothetical protein1e-22106
NC_011750:4390000:439527743952774395843567Escherichia coli IAI39 chromosome, complete genomehypothetical protein1e-22106
NC_011740:2859933:286179828617982862229432Escherichia fergusonii ATCC 35469, complete genomehypothetical protein5e-1994.4
CU928145:4950723:496683549668354967302468Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein6e-1994
NC_011748:4950723:496683549668354967302468Escherichia coli 55989, complete genomehypothetical protein6e-1994
NC_016612:2009927:203945420394542039843390Klebsiella oxytoca KCTC 1686 chromosome, complete genomehypothetical protein1e-1789.4
NC_009439:1297851:130712413071241308068945Pseudomonas mendocina ymp, complete genomehypothetical protein1e-1066.6
NC_014153:3084356:3101672310167231029371266Thiomonas intermedia K12 chromosome, complete genomehypothetical protein2e-1065.9
NC_017187:814940:820801820801821397597Arcobacter butzleri ED-1, complete genomehypothetical protein6e-1063.9
NC_020541:2769419:2778153277815327793971245Rhodanobacter sp. 2APBS1, complete genomeProtein of unknown function (DUF3296)2e-0962
NC_011000:1216430:1228249122824912294481200Burkholderia cenocepacia J2315 chromosome 1, complete sequencehypothetical protein4e-0961.6
NC_013971:3296272:330693333069333307163231Erwinia amylovora ATCC 49946 chromosome, complete genomehypothetical protein3e-0755.1
NC_017506:1100679:111187411118741112836963Marinobacter adhaerens HP15 chromosome, complete genomehypothetical protein6e-0753.9
NC_009138:467268:4790134790134801641152Herminiimonas arsenicoxydans, complete genomehypothetical protein5e-0651.2
NC_009138:1843998:1874785187478518759151131Herminiimonas arsenicoxydans, complete genomehypothetical protein5e-0650.8
NC_008542:197500:2068952068952081031209Burkholderia cenocepacia HI2424 chromosome 1, complete sequencehypothetical protein6e-0650.8