Pre_GI: BLASTP Hits

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Query: NC_004337:3049118:3058307 Shigella flexneri 2a str. 301, complete genome

Start: 3058307, End: 3058672, Length: 366

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:3088907:309809630980963098461366Shigella flexneri 2002017 chromosome, complete genomeputative transposase5e-66249
NC_011748:4792703:480199048019904802355366Escherichia coli 55989, complete genome5e-66249
CU928145:4792703:480199048019904802355366Escherichia coli 55989 chromosome, complete genomefragment of transposase, IS110 family (partial)5e-66249
NC_007946:4779745:4811641481164148127741134Escherichia coli UTI89, complete genomehypothetical protein2e-62237
NC_011751:3453683:3474872347487234760051134Escherichia coli UMN026 chromosome, complete genometransposase, IS110 family2e-62237
NC_016822:3420826:342801634280163428360345Shigella sonnei 53G, complete genometransposase, IS110 family protein2e-61233
NC_010511:3106418:3123659312365931247681110Methylobacterium sp. 4-46 chromosome, complete genometransposase IS116/IS110/IS902 family protein5e-26116
NC_010814:4099:8837883799461110Geobacter lovleyi SZ, complete genometransposase IS116/IS110/IS902 family protein1e-25115
NC_010627:127968:1284341284341295641131Burkholderia phymatum STM815 plasmid pBPHY02, complete sequencetransposase IS116/IS110/IS902 family protein8e-24108
NC_016822:4889656:4907649490764949088241176Shigella sonnei 53G, complete genomeISCps8, transposase7e-23105
NC_016822:2940000:2961415296141529625901176Shigella sonnei 53G, complete genomeISCps8, transposase7e-23105
NC_016822:2940000:2941949294194929431241176Shigella sonnei 53G, complete genomeISCps8, transposase7e-23105
NC_010658:4257310:4262305426230542634801176Shigella boydii CDC 3083-94, complete genometransposase7e-23105
NC_007613:4119771:4121697412169741228241128Shigella boydii Sb227, complete genomeputative transposase8e-23105
NC_007384:16500:170281702817855828Shigella sonnei Ss046, complete genomeputative transposase1e-22105
NC_016822:15401:162491624917094846Shigella sonnei 53G, complete genometransposase1e-22105
NC_009717:271385:2817592817592828711113Xanthobacter autotrophicus Py2 plasmid pXAUT01, complete sequencetransposase IS116/IS110/IS902 family protein1e-22104
NC_007953:811500:825335825335826225891Burkholderia xenovorans LB400 chromosome 3, complete sequencePutative transposase IS116/IS110/IS9024e-22103
NC_011753:2018500:2024849202484920260031155Vibrio splendidus LGP32 chromosome 1, complete genomeTransposase of insertion sequence ISVisp2 ; IS110 family subgroup IS11112e-1891.3
NC_008510:2605500:2610857261085726119511095Leptospira borgpetersenii serovar Hardjo-bovis JB197 chromosome 1,Transposase, IS15339e-1889
NC_008508:2572450:2577596257759625786901095Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 1,Transposase, IS15332e-1787.8
NC_008510:3189349:3205651320565132067451095Leptospira borgpetersenii serovar Hardjo-bovis JB197 chromosome 1,Transposase, IS15332e-1787.4
NC_008510:3189349:3195862319586231969561095Leptospira borgpetersenii serovar Hardjo-bovis JB197 chromosome 1,Transposase, IS15332e-1787.4
NC_016907:1:8002800290361035Gordonia polyisoprenivorans VH2 plasmid p174, complete sequenceputative transposase2e-1271.2
NC_009442:1158268:1172713117271311738401128Streptococcus suis 05ZYH33 chromosome, complete genometransposase1e-1168.6
NC_014387:1362440:1385735138573513868531119Butyrivibrio proteoclasticus B316 chromosome 1, complete genomeIS110 family transposase4e-1166.6
NC_007517:3151742:315819431581943159192999Geobacter metallireducens GS-15, complete genomeIS111A/IS1328/IS1533/IS116/IS110/IS902 transposase4e-0960.1
NC_009255:1105786:1132044113204411331231080Burkholderia vietnamiensis G4 chromosome 2, complete sequencetransposase IS116/IS110/IS902 family protein4e-0753.5
NC_010805:575709:5824475824475835261080Burkholderia multivorans ATCC 17616 chromosome 2, completeISBmu29 transposase4e-0753.5
NC_015500:78223:9106691066921961131Treponema brennaborense DSM 12168 chromosome, complete genometransposase IS116/IS110/IS902 family protein7e-0752.8
NC_015500:159199:1693661693661704961131Treponema brennaborense DSM 12168 chromosome, complete genometransposase IS116/IS110/IS902 family protein7e-0752.8
NC_015500:1337180:1345716134571613468461131Treponema brennaborense DSM 12168 chromosome, complete genometransposase IS116/IS110/IS902 family protein7e-0752.8