Pre_GI: BLASTP Hits

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Query: NC_004129:3965947:3976485 Pseudomonas fluorescens Pf-5, complete genome

Start: 3976485, End: 3977921, Length: 1437

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_018000:1852691:1862346186234618638151470Sinorhizobium fredii USDA 257 chromosome, complete genomepurine-cytosine permease YxlA7e-65248
NC_016887:221788:2217882217882232241437Nocardia cyriacigeorgica GUH-2, complete genomeputative transporter5e-52205
NC_009075:2428248:2431694243169424331181425Burkholderia pseudomallei 668 chromosome II, complete sequencepermease, cytosine/purines, uracil, thiamine, allantoin family2e-50200
NC_006351:2398403:2401848240184824032721425Burkholderia pseudomallei K96243 chromosome 2, complete sequencetransport-related, membrane protein2e-50200
NC_008835:1827905:1842195184219518436191425Burkholderia mallei NCTC 10229 chromosome I, complete sequencecytosine/purines/uracil/thiamine/allantoin permease family protein2e-50200
NC_009079:402891:4142384142384156621425Burkholderia mallei NCTC 10247 chromosome I, complete sequencepermease, cytosine/purines, uracil, thiamine, allantoin family2e-50200
NC_006349:400807:4120464120464134701425Burkholderia mallei ATCC 23344 chromosome 2, complete sequencecytosine/purines/uracil/thiamine/allantoin permease family protein2e-50200
NC_007435:1077792:1084357108435710857811425Burkholderia pseudomallei 1710b chromosome II, complete sequencecytosine/purines/uracil/thiamine/allantoin permease family protein3e-50199
NC_009078:2351046:2354486235448623559101425Burkholderia pseudomallei 1106a chromosome II, complete sequencepermease, cytosine/purines, uracil, thiamine, allantoin family4e-50199
NC_007650:722961:7345757345757359991425Burkholderia thailandensis E264 chromosome II, complete sequencecytosine/purines/uracil/thiamine/allantoin permease family protein2e-49197
NC_011283:1811000:1870673187067318720761404Klebsiella pneumoniae 342 chromosome, complete genomepermease, cytosine/purine, uracil, thiamine, allantoin family3e-49196
NC_009256:1282793:1306289130628913077191431Burkholderia vietnamiensis G4 chromosome 1, complete sequencecytosine/purines, uracil, thiamine, allantoin permease9e-49194
NC_016516:2314115:2323562232356223250461485Propionibacterium acnes TypeIA2 P.acn33 chromosome, completecytosine/purines uracil thiamine allantoin permease1e-47191
NC_016511:2321999:2332704233270423341911488Propionibacterium acnes TypeIA2 P.acn31 chromosome, completecytosine/purines uracil thiamine allantoin permease1e-47191
NC_016512:2322598:2332046233204623335331488Propionibacterium acnes TypeIA2 P.acn17 chromosome, completecytosine/purines uracil thiamine allantoin permease1e-47191
NC_014039:2320307:2329772232977223312591488Propionibacterium acnes SK137 chromosome, complete genomepermease, cytosine/purine, uracil, thiamine, allantoin family2e-47190
NC_010512:1196616:1214835121483512162621428Burkholderia cenocepacia MC0-3 chromosome 3, complete sequencepermease for cytosine/purines uracil thiamine allantoin3e-47189
NC_006085:2384892:2394342239434223958291488Propionibacterium acnes KPA171202, complete genomepurine cytosine permease-like protein8e-47188
NC_020181:929000:9297839297839312101428Enterobacter aerogenes EA1509E, complete genomeCytosine/purine/uracil/thiamine/allantoin permease family protein4e-46186
NC_016816:2508204:2510208251020825116381431Pantoea ananatis LMG 5342, complete genomecytosine/purine/uracil/thiamine/allantoinpermeas e6e-46185
NC_007348:2519447:2531189253118925326611473Ralstonia eutropha JMP134 chromosome 2, complete sequencePermease for cytosine/purines, uracil, thiamine, allantoin8e-46185
NC_013956:1994970:2011035201103520126811647Pantoea ananatis LMG 20103 chromosome, complete genomeFcy211e-45184
NC_016002:2652500:2661792266179226631831392Pseudogulbenkiania sp. NH8B, complete genomecytosine/purines uracil thiamine allantoin permease2e-45183
NC_010676:2621496:2622061262206126235061446Burkholderia phytofirmans PsJN chromosome 2, complete sequencepermease for cytosine/purines uracil thiamine allantoin7e-44178
NC_010501:2511887:2515543251554325169461404Pseudomonas putida W619, complete genomepermease for cytosine/purines uracil thiamine allantoin9e-44178
NC_005085:2774370:2774370277437027757161347Chromobacterium violaceum ATCC 12472, complete genomepurine cytosine permease-like protein1e-36154
NC_015957:5310000:5310137531013753117081572Streptomyces violaceusniger Tu 4113 chromosome, complete genomecytosine/purines uracil thiamine allantoin permease2e-1067.8
NC_018681:5627940:5639264563926456406731410Nocardia brasiliensis ATCC 700358 chromosome, complete genomepermease for cytosine/purines uracil thiamine allantoin3e-0757.4
NC_012779:1820244:1832271183227118336651395Edwardsiella ictaluri 93-146, complete genomehypothetical protein6e-0652.8