Pre_GI: BLASTP Hits

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Query: NC_004129:2440744:2443416 Pseudomonas fluorescens Pf-5, complete genome

Start: 2443416, End: 2443847, Length: 432

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008786:1767315:177882417788241779258435Verminephrobacter eiseniae EF01-2, complete genomealkylhydroperoxidase like protein, AhpD family4e-45179
NC_008463:282565:319880319880320317438Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative decarboxylase2e-30130
NC_016626:1825845:185297718529771853435459Burkholderia sp. YI23 plasmid byi_1p, complete sequencealkylhydroperoxidase1e-29128
NC_002927:1292573:130472313047231305172450Bordetella bronchiseptica RB50, complete genomehypothetical protein2e-27121
NC_007517:1107408:112464211246421125103462Geobacter metallireducens GS-15, complete genomeAlkylhydroperoxidase AhpD core1e-26118
NC_007492:3655545:367689136768913677331441Pseudomonas fluorescens PfO-1, complete genomeAlkylhydroperoxidase AhpD core7e-26115
NC_015850:1850741:186661018666101867104495Acidithiobacillus caldus SM-1 chromosome, complete genomeYnjA8e-25112
NC_008543:2696377:271457827145782715057480Burkholderia cenocepacia HI2424 chromosome 2, complete sequencealkylhydroperoxidase like protein, AhpD family6e-25112
NC_008061:2548849:255193125519312552410480Burkholderia cenocepacia AU 1054 chromosome 2, complete sequenceAlkylhydroperoxidase AhpD core6e-25112
NC_017249:263873:281754281754282263510Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein5e-25112
NC_008314:1559102:157362715736271574106480Ralstonia eutropha H16 chromosome 2, complete sequencehypothetical protein1e-24111
NC_010515:1618093:162116716211671621646480Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencealkylhydroperoxidase like protein, AhpD family1e-24111
NC_011963:1979136:199720819972081997681474Rhodobacter sphaeroides KD131 chromosome 1, complete sequenceAlkylhydroperoxidase like protein, AhpD family2e-24110
NC_015851:89006:114470114470114892423Acidithiobacillus caldus SM-1 megaplasmid, complete sequenceYnjA7e-24109
NC_016047:683368:703740703740704183444Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completealkylhydroperoxidase AhpD core3e-22103
NC_008060:3155133:319621331962133196659447Burkholderia cenocepacia AU 1054 chromosome 1, complete sequenceAlkylhydroperoxidase AhpD core4e-21100
NC_013929:7663631:767378176737817674260480Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein1e-1994.7
NC_016609:4209000:421155742115574211994438Niastella koreensis GR20-10 chromosome, complete genomealkylhydroperoxidase5e-1993.2
NC_014966:795311:796355796355796792438Vibrio vulnificus MO6-24/O chromosome II, complete sequencehypothetical protein3e-1890.5
NC_008700:1627401:163377116337711634241471Shewanella amazonensis SB2B, complete genomealkylhydroperoxidase like protein, AhpD family3e-1787
NC_020126:2216926:223202522320252232486462Myxococcus stipitatus DSM 14675, complete genomehypothetical protein4e-1786.7
NC_014655:851381:865534865534865986453Leadbetterella byssophila DSM 17132 chromosome, complete genomealkylhydroperoxidase like protein, ahpd family6e-1682.8
NC_003888:3138905:314018431401843140657474Streptomyces coelicolor A3(2), complete genomehypothetical protein2e-1580.9
NC_003155:921494:940165940165940638474Streptomyces avermitilis MA-4680, complete genomehypothetical protein3e-1580.5
NC_015957:8845274:887212788721278872600474Streptomyces violaceusniger Tu 4113 chromosome, complete genomealkylhydroperoxidase like protein4e-1373.2
NC_016111:4003290:400329040032904003790501Streptomyces cattleya NRRL 8057, complete genomealkylhydroperoxidase3e-1270.5
NC_008699:857837:867901867901868410510Nocardioides sp. JS614, complete genomealkylhydroperoxidase like protein, AhpD family5e-1269.7
NC_016582:389729:396785396785397258474Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein5e-1269.7
NC_010545:236000:239202239202239690489Corynebacterium urealyticum DSM 7109, complete genomehypothetical protein2e-1167.8
NC_013421:1954915:195891519589151959082168Pectobacterium wasabiae WPP163, complete genome9e-1165.5
NC_006361:498305:514153514153514659507Nocardia farcinica IFM 10152, complete genomehypothetical protein1e-0858.5
NC_017904:2724941:272832327283232728961639Mycobacterium sp. MOTT36Y chromosome, complete genomehypothetical protein6e-0856.2
NC_019673:1584739:158546015854601586164705Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein9e-0855.8
NC_007948:517893:524986524986525540555Polaromonas sp. JS666, complete genomeAlkylhydroperoxidase AhpD core1e-0652
NC_008543:2220698:225792922579292258468540Burkholderia cenocepacia HI2424 chromosome 2, complete sequencealkylhydroperoxidase like protein, AhpD family2e-0651.2
NC_008061:190287:221196221196221735540Burkholderia cenocepacia AU 1054 chromosome 2, complete sequenceAlkylhydroperoxidase AhpD core2e-0651.2
NC_010515:2111691:214551921455192146058540Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencealkylhydroperoxidase like protein, AhpD family2e-0651.2
NC_020133:1443934:145224514522451452844600Mycobacterium liflandii 128FXT, complete genomealkylhydroperoxidase like protein, AhpD family7e-0649.3