Pre_GI: BLASTP Hits

Some Help

Query: NC_004129:2201780:2207060 Pseudomonas fluorescens Pf-5, complete genome

Start: 2207060, End: 2208202, Length: 1143

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012660:1737423:1738537173853717396881152Pseudomonas fluorescens SBW25 chromosome, complete genomeputative phage integrase5e-141500
NC_015733:1943385:1947826194782619489471122Pseudomonas putida S16 chromosome, complete genomechorismate mutase family protein2e-134479
NC_017325:1488841:1500241150024115013261086Sinorhizobium meliloti SM11 chromosome, complete genomephage integrase family protein3e-106385
NC_009049:2131017:2151144215114421522411098Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequencephage integrase family protein8e-73274
NC_009719:1135523:1153403115340311545451143Parvibaculum lavamentivorans DS-1 chromosome, complete genomeintegrase family protein5e-55215
NC_008686:1383891:1388943138894313899981056Paracoccus denitrificans PD1222 chromosome 1, complete sequencephage integrase family protein3e-48192
NC_008358:263458:2825832825832836441062Hyphomonas neptunium ATCC 15444, complete genomesite-specific recombinase, phage integrase family3e-47189
NC_011138:3881446:3884050388405038851921143Alteromonas macleodii 'Deep ecotype', complete genomesite-specific recombinase, phage integrase family protein1e-45183
NC_015675:4565500:4581355458135545824161062Mesorhizobium opportunistum WSM2075 chromosome, complete genomeintegrase family protein8e-44177
NC_018679:3843870:3849053384905338501291077Alteromonas macleodii str. 'Balearic Sea AD45' chromosome, completephage integrase family protein site-specific recombinase1e-38160
NC_012724:3100430:3117025311702531181251101Burkholderia glumae BGR1 chromosome 1, complete genomePhage integrase2e-37156
NC_013961:3413011:341905934190593419892834Erwinia amylovora, complete genomeputative integrase/recombinase HI15727e-36151
NC_015381:3457784:3491685349168534928421158Burkholderia gladioli BSR3 chromosome 1, complete sequencephage integrase1e-35150
NC_014910:3727887:3734725373472537357771053Alicycliphilus denitrificans BC chromosome, complete genomeintegrase family protein6e-35148
NC_013364:4990365:500060150006015001365765Escherichia coli O111:H- str. 11128, complete genome5e-33142
NC_003911:2540453:255537225553722556031660Silicibacter pomeroyi DSS-3, complete genomesite-specific recombinase, phage integrase family6e-28125
NC_014216:2538500:255809425580942559092999Desulfurivibrio alkaliphilus AHT2 chromosome, complete genomeintegrase family protein7e-28125
NC_015850:1006980:1008592100859210096021011Acidithiobacillus caldus SM-1 chromosome, complete genomeputative phage integrase2e-27123
NC_010511:3106418:3119432311943231204481017Methylobacterium sp. 4-46 chromosome, complete genomeintegrase family protein1e-24114
NC_007626:3996000:4009811400981140109021092Magnetospirillum magneticum AMB-1, complete genomeIntegrase4e-23109
NC_004463:925140:940715940715941704990Bradyrhizobium japonicum USDA 110, complete genomeprobable site-specific integrase/recombinase6e-23108
NC_012880:3529017:3548469354846935495931125Dickeya dadantii Ech703, complete genomeintegrase family protein1e-21104
NC_015563:3571682:359131135913113592255945Delftia sp. Cs1-4 chromosome, complete genomeintegrase family protein2e-21103
NC_010501:4379920:4392912439291243939341023Pseudomonas putida W619, complete genomeintegrase family protein5e-21102
NC_009659:543000:548709548709549695987Janthinobacterium sp. Marseille chromosome, complete genomephage integrase site specific recombinase4e-21102
NC_011745:3443371:3443889344388934450131125Escherichia coli ED1a chromosome, complete genomeShufflon-specific DNA recombinase4e-21102
NC_008313:2685531:2688767268876726898131047Ralstonia eutropha H16 chromosome 1, complete sequencephage integrase family protein1e-20100
NC_015942:403296:4146714146714157651095Acidithiobacillus ferrivorans SS3 chromosome, complete genomeintegrase family protein2e-20100
NC_008781:4178115:418438241843824185365984Polaromonas naphthalenivorans CJ2, complete genomephage integrase family protein5e-2099
NC_005773:106000:1097241097241107971074Pseudomonas syringae pv. phaseolicola 1448A, complete genomeshufflon-specific recombinase3e-1996.7
NC_010084:534937:541878541878542864987Burkholderia multivorans ATCC 17616 chromosome 1, completeintegrase family protein1e-1894.7
NC_007434:1809946:1853156185315618541751020Burkholderia pseudomallei 1710b chromosome I, complete sequenceprobable site-specific1e-1894.7
NC_004547:611178:6162356162356173621128Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeshufflon-specific DNA recombinase1e-1894.4
NC_012988:4633930:4641261464126146422741014Methylobacterium extorquens DM4, complete genomeintegrase1e-1791.3
NC_010172:4185904:4194558419455841955621005Methylobacterium extorquens PA1, complete genomeintegrase family protein1e-1791.3
NC_015381:429940:4389684389684400111044Burkholderia gladioli BSR3 chromosome 1, complete sequencephage integrase2e-1790.5
NC_010943:325739:334344334344334940597Stenotrophomonas maltophilia K279a, complete genomeputative DNA recombinase5e-1789
NC_008380:4968492:497566649756664976619954Rhizobium leguminosarum bv. viciae 3841, complete genomeputative shufflon-specific DNA recombinase5e-1789
NC_003295:1654000:1669739166973916708031065Ralstonia solanacearum GMI1000, complete genomePUTATIVE INTEGRASE/RECOMBINASE PROTEIN2e-1687.4
NC_020063:3690308:3710476371047637115491074Enterobacteriaceae bacterium strain FGI 57, complete genomeIntegrase2e-1687.4
NC_013364:4990365:500026750002675000596330Escherichia coli O111:H- str. 11128, complete genome2e-1687
NC_008060:2913671:2934382293438229354251044Burkholderia cenocepacia AU 1054 chromosome 1, complete sequencephage integrase6e-1685.5
NC_008542:483761:4912204912204922631044Burkholderia cenocepacia HI2424 chromosome 1, complete sequencephage integrase family protein6e-1685.5
NC_010682:3313944:3349996334999633510511056Ralstonia pickettii 12J chromosome 1, complete sequenceintegrase family protein9e-1684.7
NC_008752:415599:431227431227432225999Acidovorax avenae subsp. citrulli AAC00-1, complete genomephage integrase family protein1e-1584.7
NC_014311:1635408:1647196164719616482151020Ralstonia solanacearum PSI07 chromosome, complete genomephage integrase domain3e-1583.2
NC_015422:910292:9166939166939177841092Alicycliphilus denitrificans K601 chromosome, complete genomeintegrase family protein4e-1582.8
NC_012796:1600600:1605716160571616067561041Desulfovibrio magneticus RS-1, complete genomesite-specific recombinase8e-1581.6
NC_008260:2340824:2352446235244623535491104Alcanivorax borkumensis SK2, complete genomeshufflon-specific DNA recombinase1e-1480.9
NC_012856:3000839:3011439301143930124941056Ralstonia pickettii 12D chromosome 1, complete genomeintegrase family protein2e-1480.5
NC_009840:396319:405988405988406953966Prochlorococcus marinus str. MIT 9215, complete genomeSite-specific recombinase XerD3e-1479.7
NC_015684:362236:3848903848903859091020Oligotropha carboxidovorans OM5 chromosome, complete genomeshufflon-specific DNA recombinase3e-1479.7
NC_015379:6226661:6232535623253562336681134Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative phage integrase3e-1479.7
NC_015458:2338437:2340983234098323420711089Pusillimonas sp. T7-7 chromosome, complete genomesite-specific recombinase, phage integrase family5e-1479
NC_007508:1446526:1462729146272914638351107Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeshufflon-specific recombinase5e-1479
NC_007626:959684:9702309702309713091080Magnetospirillum magneticum AMB-1, complete genomeIntegrase5e-1479
NC_008816:369074:379721379721380686966Prochlorococcus marinus str. AS9601, complete genomehypothetical protein7e-1478.6
NC_018679:3843870:3850496385049638516621167Alteromonas macleodii str. 'Balearic Sea AD45' chromosome, completeshufflon-specific DNA recombinase4e-1376.3
NC_011894:79282:884998849988762264Methylobacterium nodulans ORS 2060, complete genome5e-1375.5
NC_008782:841134:851174851174852145972Acidovorax sp. JS42, complete genomephage integrase family protein7e-1375.1
NC_007651:3560652:356953635695363570204669Burkholderia thailandensis E264 chromosome I, complete sequencesite-specific recombinase, phage integrase family1e-1274.7
NC_004578:568236:5847805847805860211242Pseudomonas syringae pv. tomato str. DC3000, complete genomesite-specific recombinase, phage integrase family2e-1273.9
NC_010511:6485500:649108764910876491626540Methylobacterium sp. 4-46 chromosome, complete genome8e-1271.6
NC_015856:3059737:307056230705623071161600Collimonas fungivorans Ter331 chromosome, complete genomesite-specific recombinase, phage integrase family9e-1271.6
NC_014910:966761:9810169810169826051590Alicycliphilus denitrificans BC chromosome, complete genomeintegrase family protein1e-1171.2
NC_014355:243543:2579012579012590221122Candidatus Nitrospira defluvii, complete genomephage integrase1e-1170.9
NC_008702:2039462:2046178204617820472541077Azoarcus sp. BH72, complete genomesite-specific recombinase, phage integrase family2e-1170.5
NC_017033:2081206:210106921010692101995927Frateuria aurantia DSM 6220 chromosome, complete genomesite-specific recombinase XerD2e-1170.5
NC_011000:183928:2032112032112043381128Burkholderia cenocepacia J2315 chromosome 1, complete sequenceputative plasmid recombinase2e-1170.1
NC_014355:1223243:1233478123347812345481071Candidatus Nitrospira defluvii, complete genomeputative integrase3e-1170.1
NC_020209:945000:952516952516952695180Pseudomonas poae RE*1-1-14, complete genomechorismate mutase3e-1169.7
NC_013722:3117442:3131487313148731325811095Xanthomonas albilineans, complete genomeputative shufflon-specific dna recombinase protein5e-1169.3
NC_014355:288000:2962442962442972841041Candidatus Nitrospira defluvii, complete genomeputative phage integrase8e-1065.1
NC_008314:2686851:2690066269006626911061041Ralstonia eutropha H16 chromosome 2, complete sequencephage integrase family protein1e-0964.3
NC_007973:2150962:216320021632002163421222Ralstonia metallidurans CH34 chromosome 1, complete sequencehypothetical protein2e-0963.9
NC_013364:863209:884209884209884565357Escherichia coli O111:H- str. 11128, complete genome3e-0963.2
NC_009074:1470689:148737214873721487830459Burkholderia pseudomallei 668 chromosome I, complete sequencesite-specific recombinase, phage integrase family7e-0962
AP010958:867869:878140878140878418279Escherichia coli O103:H2 str. 12009 DNA, complete genome5e-0859.3
NC_013353:867869:878140878140878418279Escherichia coli O103:H2 str. 12009, complete genome5e-0859.3
NC_008800:1300500:1308992130899213101101119Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative integrase/recombinase protein4e-0859.3
NC_007759:2179000:2183062218306221841561095Syntrophus aciditrophicus SB, complete genomephage integrase family protein4e-0859.3
NC_016809:389561:4020064020064030491044Haemophilus influenzae 10810, complete genomeDLP12 prophage integrase6e-0858.9
NC_015259:485015:5473145473145485251212Polymorphum gilvum SL003B-26A1 chromosome, complete genomeIntegrase family protein1e-0758.2
NC_011206:1233985:123407912340791235074996Acidithiobacillus ferrooxidans ATCC 53993, complete genomeintegrase family protein1e-0757.8
NC_002927:3827211:3833598383359838345991002Bordetella bronchiseptica RB50, complete genomeshufflon-specific DNA recombinase3e-0757
NC_010622:249625:2798672798672809881122Burkholderia phymatum STM815 chromosome 1, complete sequenceintegrase family protein2e-0757
NC_009074:3409849:3414673341467334163881716Burkholderia pseudomallei 668 chromosome I, complete sequenceIntegrase2e-0757
NC_015593:2553500:2557151255715125582871137Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completeintegrase family protein3e-0756.6
NC_014722:771483:788089788089788976888Burkholderia rhizoxinica HKI 454, complete genomeDNA integration/recombination/inversion protein4e-0756.2
NC_014972:1621850:163002716300271630962936Desulfobulbus propionicus DSM 2032 chromosome, complete genomeintegrase family protein4e-0756.2
NC_015856:1182974:1197577119757711985781002Collimonas fungivorans Ter331 chromosome, complete genomephage integrase9e-0755.1
NC_009943:748788:7553137553137565061194Candidatus Desulfococcus oleovorans Hxd3, complete genomeintegrase family protein1e-0654.3
NC_015381:1173603:1180904118090411820971194Burkholderia gladioli BSR3 chromosome 1, complete sequenceGTP-binding protein LepA1e-0654.3
NC_015259:673662:7011397011397022691131Polymorphum gilvum SL003B-26A1 chromosome, complete genomeIntegrase family protein1e-0654.3
NC_008609:3921113:3938275393827539394831209Pelobacter propionicus DSM 2379, complete genomephage integrase family protein2e-0654.3
NC_008789:350650:3635873635873647261140Halorhodospira halophila SL1, complete genomephage integrase family protein3e-0653.5
NC_015388:1020747:102930310293031030148846Desulfobacca acetoxidans DSM 11109 chromosome, complete genomeintegrase family protein3e-0653.5
NC_010002:2110953:2110953211095321119541002Delftia acidovorans SPH-1, complete genomeintegrase family protein5e-0652.4
NC_007577:353755:364398364398365012615Prochlorococcus marinus str. MIT 9312, complete genomeputative site-specific integrase/recombinase5e-0652.4
NC_014323:961825:970186970186971163978Herbaspirillum seropedicae SmR1 chromosome, complete genomesite-specific phage recombinase/integrase5e-0652.4
NC_013456:1843000:1843625184362518448301206Vibrio sp. Ex25 chromosome 1, complete genomeintegrase8e-0652
NC_005139:1784000:1822239182223918234471209Vibrio vulnificus YJ016 chromosome I, complete sequenceintegrase1e-0551.6