Pre_GI Gene

Some Help

Host: NC_004547 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004547:611178 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
6111786122151038putative Type IV pilus proteinQuickGO ontologyBLASTP
612271612876606putative type IV pilus prepilinQuickGO ontology
612883613401519putative Type IV pilus proteinQuickGO ontologyBLASTP
613398614057660putative prepilin peptidaseQuickGO ontology
6140716154651395putative Type IV pilus prepilin proteinQuickGO ontologyBLASTP
615469615948480alternative C-terminus for the PilV protein fragmentQuickGO ontologyBLASTP
615967616182216alternative C-terminus for the PilV protein fragmentQuickGO ontologyBLASTP
6162356173621128shufflon-specific DNA recombinaseQuickGO ontologyBLASTP
617411617902492hypothetical proteinBLASTP
618090618890801putative plasmid transfer proteinQuickGO ontologyBLASTP
6190346202361203putative plasmid transfer proteinQuickGO ontologyBLASTP
620303620752450putative plasmid protein proteinQuickGO ontology
620819621118300hypothetical protein
621156621848693hypothetical proteinBLASTP
621946622320375hypothetical protein
622423623298876hypothetical proteinBLASTP
623308624021714hypothetical proteinBLASTP
624021624608588hypothetical proteinBLASTP
624609625130522hypothetical proteinBLASTP
625127625744618hypothetical proteinBLASTP
625722626204483hypothetical protein
6262086283042097putative plasmid transfer proteinQuickGO ontologyBLASTP
628306629061756hypothetical proteinBLASTP
629084629278195hypothetical proteinBLASTP
629420629959540hypothetical proteinBLASTP
630094630414321hypothetical proteinBLASTP
630416630655240hypothetical proteinBLASTP
630682631023342hypothetical proteinBLASTP
631033631395363hypothetical proteinBLASTP
631392632048657hypothetical proteinBLASTP
632045632971927hypothetical proteinBLASTP
6329616344931533hypothetical proteinBLASTP