Pre_GI: BLASTP Hits

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Query: NC_003888:3893187:3894706 Streptomyces coelicolor A3(2), complete genome

Start: 3894706, End: 3895866, Length: 1161

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016111:2912962:2914958291495829161271170Streptomyces cattleya NRRL 8057, complete genomehypothetical protein7e-127454
NC_018750:6070260:6085041608504160861861146Streptomyces venezuelae ATCC 10712, complete genomehypothetical protein1e-35150
NC_013929:2536255:2551047255104725521771131Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein3e-34146
NC_013929:3722867:3742328374232837434461119Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein2e-32140
NC_003888:7561923:7615994761599476171121119Streptomyces coelicolor A3(2), complete genomehypothetical protein6e-32138
NC_013131:10322152:1035736610357366103584031038Catenulispora acidiphila DSM 44928, complete genomeDnaB domain protein helicase domain protein6e-1788.6
NC_009953:5733211:5733211573321157357452535Salinispora arenicola CNS-205 chromosome, complete genomereplicative DNA helicase1e-1067.8
NC_016111:3308310:3319536331953633217402205Streptomyces cattleya NRRL 8057, complete genomePrimary replicative DNA helicase (fragment)3e-1066.6
NC_002677:3204710:3230314323031432321281815Mycobacterium leprae TN, complete genomereplicative DNA helicase2e-0860.8
NC_011896:3204579:3230183323018332319971815Mycobacterium leprae Br4923, complete genomereplicative DNA helicase2e-0860.8
NC_016947:70210:7739777397800242628Mycobacterium intracellulare MOTT-02 chromosome, complete genomehypothetical protein1e-0860.8
NC_004369:2968251:2998493299849330000761584Corynebacterium efficiens YS-314, complete genomereplicative DNA helicase7e-0858.9
NC_006274:5267585:5282312528231252836731362Bacillus cereus E33L, complete genomereplicative DNA helicase6e-0858.9
NC_005957:5203915:5219080521908052204411362Bacillus thuringiensis serovar konkukian str. 97-27, completereplicative DNA helicase6e-0858.9
NC_005945:5202176:5210061521006152114221362Bacillus anthracis str. Sterne, complete genomereplicative DNA helicase6e-0858.9
NC_003997:5200805:5208690520869052100511362Bacillus anthracis str. Ames, complete genomereplicative DNA helicase6e-0858.9
NC_014335:5165211:5176991517699151783521362Bacillus cereus biovar anthracis str. CI chromosome, completereplicative DNA helicase DnaC6e-0858.9
NC_012472:5239944:5250908525090852522691362Bacillus cereus 03BB102, complete genomereplicative DNA helicase6e-0858.9
NC_007530:5197854:5208816520881652101771362Bacillus anthracis str. 'Ames Ancestor', complete genomereplicative DNA helicase6e-0858.9
NC_011658:5239509:5250428525042852517891362Bacillus cereus AH187 chromosome, complete genomereplicative DNA helicase6e-0858.9
NC_012659:5200831:5208716520871652100771362Bacillus anthracis str. A0248, complete genomereplicative DNA helicase6e-0858.9
NC_016771:5191937:5202855520285552042161362Bacillus cereus NC7401, complete genomereplicative DNA helicase6e-0858.9
NC_016779:5189139:5204303520430352056641362Bacillus cereus F837/76 chromosome, complete genomeReplicative DNA helicase6e-0858.9
NC_017200:5325977:5336897533689753382581362Bacillus thuringiensis serovar finitimus YBT-020 chromosome,replicative DNA helicase6e-0858.9
NC_018681:9262000:9266002926600292690973096Nocardia brasiliensis ATCC 700358 chromosome, complete genomereplicative DNA helicase5e-0858.9
NC_013947:5747385:576965457696545770643990Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehypothetical protein8e-0858.5
NC_015671:3470903:3489365348936534920132649Cellvibrio gilvus ATCC 13127 chromosome, complete genomereplicative DNA helicase9e-0858.2
NC_009328:3504454:3524825352482535261891365Geobacillus thermodenitrificans NG80-2 chromosome, complete genomereplicative DNA helicase2e-0757.4
NC_009338:912894:9173219173219199602640Mycobacterium gilvum PYR-GCK chromosome, complete genomeDnaB domain-containing protein2e-0757
NC_008699:4922465:4934880493488049373542475Nocardioides sp. JS614, complete genomeDnaB domain protein helicase, C-terminal domain protein4e-0755.8
NC_011653:1339868:1379577137957713809141338Thermosipho africanus TCF52B, complete genomereplicative DNA helicase4e-0755.8
NC_015434:5434500:5439821543982154417761956Verrucosispora maris AB-18-032 chromosome, complete genomeDnaB domain-containing protein helicase domain-containing protein3e-0653.5
NC_012803:2454380:2465331246533124667191389Micrococcus luteus NCTC 2665, complete genomeprimary replicative DNA helicase3e-0653.1