Pre_GI: BLASTP Hits

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Query: NC_003888:2814360:2818657 Streptomyces coelicolor A3(2), complete genome

Start: 2818657, End: 2819433, Length: 777

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016111:1766010:176998917699891770795807Streptomyces cattleya NRRL 8057, complete genomehypothetical protein2e-74278
NC_009633:2350892:236961823696182370358741Alkaliphilus metalliredigens QYMF chromosome, complete genomehypothetical protein6e-1891.3
NC_014836:2325559:2326425232642523289412517Desulfurispirillum indicum S5 chromosome, complete genomehypothetical protein1e-1584
NC_014248:685656:7070677070677097632697Nostoc azollae 0708 chromosome, complete genomehypothetical protein6e-1477.8
NC_010475:2537500:2548021254802125506302610Synechococcus sp. PCC 7002, complete genomeFe-S oxidoreductases family 2 protein (adical SAM domain protein)1e-1377
NC_010516:3234791:324222932422293242942714Clostridium botulinum B1 str. Okra, complete genomehypothetical protein2e-1376.6
NC_012563:3416509:342071234207123421425714Clostridium botulinum A2 str. Kyoto, complete genomehypothetical protein2e-1376.6
NC_016584:5388500:539712053971205397824705Desulfosporosinus orientis DSM 765 chromosome, complete genomeradical SAM-linked protein2e-1376.6
NC_009699:3217315:322475332247533225460708Clostridium botulinum F str. Langeland chromosome, complete genomehypothetical protein2e-1376.6
NC_009698:3046833:305426030542603054973714Clostridium botulinum A str. Hall chromosome, complete genomehypothetical protein1e-1376.6
NC_018515:4334240:436170643617064362401696Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeradical SAM-linked protein4e-1375.5
NC_011769:247202:2691932691932718862694Desulfovibrio vulgaris str. 'Miyazaki F', complete genomeBeta tubulin, autoregulation binding site6e-1374.7
NC_015388:2499187:2514908251490825174242517Desulfobacca acetoxidans DSM 11109 chromosome, complete genomeProtein of unknown function DUF23442e-1169.7
NC_021182:2160580:218050821805082181227720Clostridium pasteurianum BC1, complete genomeradical SAM-linked protein5e-1168.2
NC_020291:5752099:575140557514055752115711Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomehypothetical protein7e-1167.8
NC_011883:1182000:1198486119848612012542769Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,Radical SAM domain protein1e-0860.1
NC_014652:666227:675574675574676209636Caldicellulosiruptor hydrothermalis 108 chromosome, completehypothetical protein4e-0858.5
NC_015949:2002752:201494620149462015581636Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomehypothetical protein5e-0858.2
NC_016751:1700164:170224217022421702796555Marinitoga piezophila KA3 chromosome, complete genomeradical SAM-linked protein2e-0653.1