Pre_GI: BLASTP Hits

Some Help

Query: NC_003305:1035342:1051746 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 1051746, End: 1052690, Length: 945

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003063:1019674:102206610220661023052987Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein1e-168592
NC_013093:2895511:289650028965002897438939Actinosynnema mirum DSM 43827, complete genomeOrnithine cyclodeaminase1e-79296
NC_013173:1231213:125346112534611254420960Desulfomicrobium baculatum DSM 4028, complete genomeOrnithine cyclodeaminase2e-51202
NC_007908:1010162:102502710250271025998972Rhodoferax ferrireducens T118, complete genomeOrnithine cyclodeaminase8e-38157
NC_018000:1852691:186701018670101867891882Sinorhizobium fredii USDA 257 chromosome, complete genomeornithine cyclodeaminase 23e-36152
NC_015138:201323:202271202271203254984Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeOrnithine cyclodeaminase9e-32137
NC_008752:166877:165897165897166880984Acidovorax avenae subsp. citrulli AAC00-1, complete genomeOrnithine cyclodeaminase1e-31137
NC_009328:2378345:2387462238746223884661005Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeectoine utilization protein EutC7e-30131
NC_015320:790137:8061088061088071151008Archaeoglobus veneficus SNP6 chromosome, complete genomealanine dehydrogenase3e-27122
NC_014507:2568933:258515825851582586093936Methanoplanus petrolearius DSM 11571 chromosome, complete genomeornithine cyclodeaminase6e-27121
NC_009464:1397739:140147014014701402441972Uncultured methanogenic archaeon RC-I, complete genomeornithine cyclodeaminase1e-26120
NC_008786:2425314:244290624429062443889984Verminephrobacter eiseniae EF01-2, complete genomeOrnithine cyclodeaminase2e-26119
NC_015151:1872280:188119418811941882159966Vulcanisaeta moutnovskia 768-28 chromosome, complete genomeornithine cyclodeaminase3e-24112
NC_013526:911909:940597940597941505909Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomeOrnithine cyclodeaminase2e-23110
NC_002947:4994335:502668950266895027681993Pseudomonas putida KT2440, complete genomeornithine cyclodeaminase1e-22107
NC_020164:2219612:221961222196122220559948Staphylococcus warneri SG1, complete genomeornithine cyclodeaminase1e-22107
NC_013194:761166:778243778243779202960Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completeOrnithine cyclodeaminase1e-22107
NC_003065:27163:5838358383594981116Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequenceornithine cyclodeaminase7e-22104
NC_003308:1:2498024980260951116Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequenceornithine cyclodeaminase7e-22104
NC_007929:1290568:131007413100741311060987Lactobacillus salivarius subsp. salivarius UCC118, complete genomeOrnithine cyclodeaminase7e-21101
NC_004461:277291:316851316851317801951Staphylococcus epidermidis ATCC 12228, complete genomeornithine cyclodeaminase9e-21100
NC_009380:1177316:118035711803571181346990Salinispora tropica CNB-440 chromosome, complete genomeornithine cyclodeaminase2e-1997.1
NC_010336:1335558:1338148133814813391641017Francisella philomiragia subsp. philomiragia ATCC 25017, completeOrnithine cyclodeaminase5e-1995.5
NC_014923:5787493:5807834580783458089071074Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeOrnithine cyclodeaminase4e-1995.5
NC_015675:6342164:6362505636250563635781074Mesorhizobium opportunistum WSM2075 chromosome, complete genomeOrnithine cyclodeaminase4e-1995.5
NC_019973:5716453:5736794573679457378671074Mesorhizobium australicum WSM2073, complete genomeputative ornithine cyclodeaminase, mu-crystallin4e-1995.5
NC_016943:3270308:328337132833713284318948Blastococcus saxobsidens DD2, complete genomeornithine cyclodeaminase/mu-crystallin7e-1994.7
NC_008601:1518136:1532670153267015336861017Francisella tularensis subsp. novicida U112, complete genomeornithine cyclodeaminase4e-1892
NC_009749:558171:558171558171559031861Francisella tularensis subsp. holarctica FTA, complete genomeornithine cyclodeaminase5e-1892
NC_007880:556334:556334556334557182849Francisella tularensis subsp. holarctica, complete genomeornithine cyclodeaminase5e-1891.7
NC_007168:2448422:245152424515242452483960Staphylococcus haemolyticus JCSC1435, complete genomeornithine cyclodeaminase2e-1790.1
NC_014034:2253649:2271812227181222728641053Rhodobacter capsulatus SB1003 chromosome, complete genomeornithine cyclodeaminase-13e-1789.7
NC_009257:386283:386283386283387218936Francisella tularensis subsp. tularensis WY96-3418 chromosome,ornithine cyclodeaminase5e-1788.6
NC_015186:2165628:2167151216715121682211071Acidiphilium multivorum AIU301, complete genomeornithine cyclodeaminase6e-1788.2
NC_019962:1750497:180660218066021807591990Natrinema pellirubrum DSM 15624, complete genomeputative ornithine cyclodeaminase, mu-crystallin8e-1787.8
NC_013744:300000:312490312490313479990Haloterrigena turkmenica DSM 5511 plasmid pHTUR01, completeOrnithine cyclodeaminase2e-1686.3
NC_010994:57362:611626116262109948Rhizobium etli CIAT 652, complete genomeornithine cyclodeaminase protein1e-1584
NC_007482:607365:6073656073656084351071Pseudoalteromonas haloplanktis TAC125 chromosome II, completeornithine cyclodeaminase1e-1480.9
NC_007948:4558000:4569675456967545707331059Polaromonas sp. JS666, complete genomeOrnithine cyclodeaminase2e-1480.1
NC_008380:58232:620456204562992948Rhizobium leguminosarum bv. viciae 3841, complete genomeOrnithine cyclodeaminase (OCD).2e-1479.7
NC_015379:3570658:3581989358198935830441056Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,ornithine cyclodeaminase5e-1478.6
NC_009832:3313058:332765333276533328609957Serratia proteamaculans 568, complete genomeOrnithine cyclodeaminase2e-1376.3
NC_012587:3613162:361933436193343620281948Rhizobium sp. NGR234, complete genomeornithine cyclodeaminase/mu-crystallin family protein3e-1376.3
NC_011985:61003:654806548066430951Agrobacterium radiobacter K84 chromosome 1, complete genomeornithine cyclodeaminase protein4e-1375.5
NC_015312:1371530:139585813958581396772915Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeornithine cyclodeaminase/mu-crystallin1e-1274.3
NC_012850:4422966:442742644274264428373948Rhizobium leguminosarum bv. trifolii WSM1325, complete genomeOrnithine cyclodeaminase1e-1274.3
NC_014761:1321187:132335113233511324247897Oceanithermus profundus DSM 14977 chromosome, complete genomeornithine cyclodeaminase1e-1273.9
NC_015733:2720183:2726967272696727280191053Pseudomonas putida S16 chromosome, complete genomeornithine cyclodeaminase1e-1273.9
NC_003296:556836:6038426038426048911050Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completeornithine cyclodeaminase2e-1273.2
NC_013202:906044:935148935148936140993Halomicrobium mukohataei DSM 12286, complete genomeOrnithine cyclodeaminase3e-1272.8
NC_016629:2784000:278836227883622789264903Desulfovibrio africanus str. Walvis Bay chromosome, completeornithine cyclodeaminase/mu-crystallin4e-1272.4
NC_007761:57199:610116101161958948Rhizobium etli CFN 42, complete genomeornithine cyclodeaminase protein1e-1170.9
NC_020126:5470090:5475502547550254766021101Myxococcus stipitatus DSM 14675, complete genomeornithine cyclodeaminase7e-1168.2
NC_009792:2688747:2712926271292627139301005Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein2e-1066.6
NC_015856:633353:650341650341651258918Collimonas fungivorans Ter331 chromosome, complete genomeornithine cyclodeaminase2e-1066.6
NC_010999:349252:354632354632355627996Lactobacillus casei, complete genomeOrnithine cyclodeaminase/mu-crystallin:Shikimate/quinate 5-dehydrogenase3e-1065.9
NC_014334:369974:377906377906378901996Lactobacillus casei str. Zhang chromosome, complete genomeputative ornithine cyclodeaminase3e-1065.9
NC_015957:7348269:738051373805137381427915Streptomyces violaceusniger Tu 4113 chromosome, complete genomeornithine cyclodeaminase/mu-crystallin5e-1065.5
NC_015435:1713051:171389617138961714846951Metallosphaera cuprina Ar-4 chromosome, complete genomeornithine cyclodeaminase2e-0757
NC_015727:1294532:132413713241371325135999Cupriavidus necator N-1 plasmid BB1p, complete sequenceornithine cyclodeaminase Ocd2e-0757
NC_013947:6678000:669618966961896697094906Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeornithine cyclodeaminase/mu-crystallin3e-0653.1
NC_016582:7033000:703840670384067039053648Streptomyces bingchenggensis BCW-1 chromosome, complete genomeornithine cyclodeaminase3e-0653.1