Pre_GI: BLASTP Hits

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Query: NC_003305:1035342:1039130 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 1039130, End: 1040476, Length: 1347

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003063:1019674:1034280103428010356621383Agrobacterium tumefaciens str. C58 chromosome linear, completeatrazine chlorohydrolase0890
NC_008254:3246306:3247671324767132490231353Mesorhizobium sp. BNC1, complete genomeformiminoglutamate deiminase1e-173610
NC_010694:2492378:2507166250716625085211356Erwinia tasmaniensis, complete genomePutative chlorohydrolase1e-97357
NC_006677:1255079:1270480127048012718411362Gluconobacter oxydans 621H, complete genomeatrazine chlorohydrolase1e-96354
NC_007760:645016:6618616618616632581398Anaeromyxobacter dehalogenans 2CP-C, complete genomeformiminoglutamate deiminase2e-49196
NC_011527:1443076:1441635144163514430891455Coxiella burnetii CbuG_Q212, complete genomechlorohydrolase/deaminase family protein7e-1789
NC_009727:1542000:1542598154259815439531356Coxiella burnetii Dugway 7E9-12, complete genomeamidohydrolase family protein9e-1788.6
NC_011528:1282691:1281250128125012827041455Coxiella burnetii CbuK_Q154, complete genomechlorohydrolase/deaminase family protein9e-1788.6
NC_014210:2638773:2658379265837926597401362Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,amidohydrolase4e-1583.2
NC_007404:974461:1007134100713410084591326Thiobacillus denitrificans ATCC 25259, complete genomeN-ethylammeline chlorohydrolase6e-1582.4
NC_000909:1517461:1517461151746115187231263Methanocaldococcus jannaschii DSM 2661, complete genomeN-ethylammeline chlorohydrolase (trzA)4e-1479.7
NC_019978:1022209:1035696103569610370541359Halobacteroides halobius DSM 5150, complete genomecytosine deaminase-like metal-dependent hydrolase1e-1378.2
NC_014315:2327083:2329675232967523310031329Nitrosococcus watsoni C-113 chromosome, complete genomeamidohydrolase1e-1378.2
NC_015731:2811579:2811579281157928129101332Nitrosomonas sp. Is79A3 chromosome, complete genome5-methylthioadenosine/S-adenosylhomocysteine deaminase2e-1377.8
NC_014654:2311818:2317473231747323188491377Halanaerobium sp. 'sapolanicus' chromosome, complete genomeS-adenosylhomocysteine deaminase2e-1377.4
NC_014364:3001597:3029161302916130305311371Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeamidohydrolase4e-1376.6
NC_009051:1074993:1076713107671310780201308Methanoculleus marisnigri JR1, complete genomeamidohydrolase6e-1375.9
NC_015865:3657:90349034102901257Thermococcus sp. 4557 chromosome, complete genomemetal-dependent amidohydrolase1e-1274.7
NC_006395:217139:2407492407492420831335Haloarcula marismortui ATCC 43049 plasmid pNG700, completeN-ethylammeline chlorohydrolase2e-1273.9
NC_014364:2863686:2863686286368628650921407Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeamidohydrolase3e-1273.6
NC_015474:72103:8973989739910071269Pyrococcus sp. NA2 chromosome, complete genomeN-ethylammeline chlorohydrolase4e-1273.2
NC_012029:45462:6423164231655651335Halorubrum lacusprofundi ATCC 49239 chromosome 1, complete genomeamidohydrolase1e-1171.6
NC_014364:394899:4563214563214576761356Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeamidohydrolase1e-1171.6
NC_015658:1:7707770790291323Halopiger xanaduensis SH-6 plasmid pHALXA01, complete sequenceS-adenosylhomocysteine deaminase1e-1171.2
NC_013967:2760473:2760473276047327617861314Haloferax volcanii DS2 chromosome, complete genomecytosine deaminase3e-1170.5
NC_010723:575254:5914445914445928051362Clostridium botulinum E3 str. Alaska E43, complete genomehydroxydechloroatrazine ethylaminohydrolase4e-1170.1
NC_004129:4993974:5019392501939250207231332Pseudomonas fluorescens Pf-5, complete genomeN-ethylammeline chlorohydrolase6e-1169.3
NC_016584:4860360:4883128488312848844321305Desulfosporosinus orientis DSM 765 chromosome, complete genomecytosine deaminase9e-1168.6
NC_007681:218921:2462962462962475731278Methanosphaera stadtmanae DSM 3091, complete genomepredicted metal-dependent hydrolase1e-1068.2
NC_015958:1516944:1531836153183615331341299Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genome5-methylthioadenosine/S-adenosylhomocysteine deaminase1e-1068.2
NC_015676:546895:5468955468955482051311Methanosalsum zhilinae DSM 4017 chromosome, complete genomeamidohydrolase2e-1067.4
NC_015681:1201926:1204632120463212059421311Thermodesulfatator indicus DSM 15286 chromosome, complete genomeamidohydrolase3e-1067
NC_019977:1897556:1907287190728719085881302Methanomethylovorans hollandica DSM 15978, complete genomecytosine deaminase-like metal-dependent hydrolase7e-1065.9
NC_014253:729996:7492297492297505211293Methanohalobium evestigatum Z-7303 chromosome, complete genomeamidohydrolase5e-1065.9
NC_010674:615963:6276806276806290411362Clostridium botulinum B str. Eklund 17B, complete genomehydroxydechloroatrazine ethylaminohydrolase5e-1065.9
NC_009654:4624459:4633743463374346351011359Marinomonas sp. MWYL1, complete genomeamidohydrolase8e-1065.5
NC_015499:309394:3175213175213188011281Thermodesulfobium narugense DSM 14796 chromosome, complete genome5-methylthioadenosine/S- adenosylhomocysteinedeaminase3e-0963.5
NC_013744:159861:1751081751081764361329Haloterrigena turkmenica DSM 5511 plasmid pHTUR01, completeamidohydrolase5e-0962.8
NC_018876:996855:1006097100609710073951299Methanolobus psychrophilus R15 chromosome, complete genomeN-ethylammeline chlorohydrolase5e-0962.8
NC_018691:3437821:3437821343782134392181398Alcanivorax dieselolei B5 chromosome, complete genomeCytosine deaminase-related metal-dependent hydrolase6e-0962.4
NC_009922:411434:4259964259964273301335Alkaliphilus oremlandii OhILAs, complete genomeamidohydrolase1e-0861.6
NC_013665:2132000:2132670213267021338421173Methanocella paludicola SANAE, complete genomeamidohydrolase family protein4e-0860.1
NC_014666:7222000:7226601722660172280371437Frankia sp. EuI1c chromosome, complete genomeamidohydrolase8e-0858.9
NC_011297:767333:7889637889637902431281Dictyoglomus thermophilum H-6-12, complete genomeamidohydrolase family7e-0858.9
NC_011297:787932:7889637889637902431281Dictyoglomus thermophilum H-6-12, complete genomeamidohydrolase family7e-0858.9
NC_011146:3426500:3477344347734434785881245Geobacter bemidjiensis Bem, complete genomeamidohydrolase2e-0757.8
NC_012918:1444333:1446701144670114479451245Geobacter sp. M21 chromosome, complete genomeamidohydrolase4e-0756.2
NC_016027:2387832:2392715239271523940791365Gluconacetobacter xylinus NBRC 3288, complete genomehydroxydechloroatrazine ethylaminohydrolase1e-0654.7
NC_020210:2133996:2179010217901021804371428Geobacillus sp. GHH01, complete genomehydroxydechloroatrazine ethylaminohydrolase3e-0653.9
NC_010501:3448389:3475578347557834769631386Pseudomonas putida W619, complete genomeamidohydrolase3e-0653.5
NC_014328:2872721:2893648289364828949521305Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative amidohydrolase1e-0552