Pre_GI: OUP Neighbours

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Query: NC_017268:747429 Treponema pallidum subsp. pallidum str. Chicago chromosome,

D: 40.7332

Host Lineage: Treponema pallidum; Treponema; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: This organisms is divided into subspecies each of which causes a specific disease. pallidum causes the venereal disease syphilis. pertenue, carateum and endemicum cause the skin infections yaws, pinta and bejel, respectively. Cells are motile, slender, helically shaped flexible organisms, 0.1-0.18 microns in diameter and 6-20 microns long.

Number of Neighbours: 80




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_015714:238891*Treponema paraluiscuniculi Cuniculi A chromosome, complete genome79.9632 %Subject ←→ Query33.229
NC_016842:1*Treponema pallidum subsp. pertenue str. SamoaD chromosome, complete78.7837 %Subject ←→ Query33.6701
NC_010741:949732*Treponema pallidum subsp. pallidum SS14, complete genome79.758 %Subject ←→ Query33.6941
NC_016842:748419*Treponema pallidum subsp. pertenue str. SamoaD chromosome, complete94.1023 %Subject ←→ Query33.7123
NC_016843:1*Treponema pallidum subsp. pertenue str. Gauthier chromosome,78.7714 %Subject ←→ Query33.7521
NC_000919:107373*Treponema pallidum subsp. pallidum str. Nichols, complete genome80.1961 %Subject ←→ Query33.8461
NC_010741:107370*Treponema pallidum subsp. pallidum SS14, complete genome80.1961 %Subject ←→ Query33.9494
NC_017268:1*Treponema pallidum subsp. pallidum str. Chicago chromosome,78.7714 %Subject ←→ Query34.0577
NC_021508:107384*Treponema pallidum subsp. pallidum SS14, complete genome80.2267 %Subject ←→ Query34.2656
NC_015714:943178*Treponema paraluiscuniculi Cuniculi A chromosome, complete genome76.4246 %Subject ←→ Query34.2929
NC_010741:775000*Treponema pallidum subsp. pallidum SS14, complete genome79.3413 %Subject ←→ Query34.3142
NC_017268:949543*Treponema pallidum subsp. pallidum str. Chicago chromosome,80.0061 %Subject ←→ Query34.6634
NC_021508:949769*Treponema pallidum subsp. pallidum SS14, complete genome79.761 %Subject ←→ Query34.8452
NC_016844:107382*Treponema pallidum subsp. pallidum DAL-1 chromosome, complete80.2298 %Subject ←→ Query34.9891
NC_017268:107387*Treponema pallidum subsp. pallidum str. Chicago chromosome,80.2298 %Subject ←→ Query35.0316
NC_000919:948287*Treponema pallidum subsp. pallidum str. Nichols, complete genome79.7273 %Subject ←→ Query35.037
NC_016842:949899*Treponema pallidum subsp. pertenue str. SamoaD chromosome, complete76.5839 %Subject ←→ Query35.1975
NC_000919:746875Treponema pallidum subsp. pallidum str. Nichols, complete genome93.8113 %Subject ←→ Query35.1998
NC_016843:775371*Treponema pallidum subsp. pertenue str. Gauthier chromosome,83.0362 %Subject ←→ Query35.3265
NC_016848:775822*Treponema pallidum subsp. pertenue str. CDC2 chromosome, complete79.2494 %Subject ←→ Query35.369
NC_015714:768500*Treponema paraluiscuniculi Cuniculi A chromosome, complete genome83.0882 %Subject ←→ Query35.483
NC_016844:950231*Treponema pallidum subsp. pallidum DAL-1 chromosome, complete80.0061 %Subject ←→ Query35.5106
NC_017268:775000*Treponema pallidum subsp. pallidum str. Chicago chromosome,79.4914 %Subject ←→ Query35.5446
NC_016843:950000*Treponema pallidum subsp. pertenue str. Gauthier chromosome,76.5931 %Subject ←→ Query35.6176
NC_016844:775334*Treponema pallidum subsp. pallidum DAL-1 chromosome, complete83.1955 %Subject ←→ Query35.8628
NC_021508:775264*Treponema pallidum subsp. pallidum SS14, complete genome79.3352 %Subject ←→ Query36.5637
NC_015714:741044*Treponema paraluiscuniculi Cuniculi A chromosome, complete genome97.0987 %Subject ←→ Query36.7394
NC_016848:950353*Treponema pallidum subsp. pertenue str. CDC2 chromosome, complete76.5901 %Subject ←→ Query36.963
NC_000919:773784Treponema pallidum subsp. pallidum str. Nichols, complete genome79.3474 %Subject ←→ Query36.964
NC_021508:12543*Treponema pallidum subsp. pallidum SS14, complete genome79.277 %Subject ←→ Query36.9954
NC_016844:12545*Treponema pallidum subsp. pallidum DAL-1 chromosome, complete79.3107 %Subject ←→ Query37.0075
NC_010741:745357Treponema pallidum subsp. pallidum SS14, complete genome94.0656 %Subject ←→ Query37.2477
NC_000919:12545*Treponema pallidum subsp. pallidum str. Nichols, complete genome79.3168 %Subject ←→ Query37.2678
NC_010741:12542*Treponema pallidum subsp. pallidum SS14, complete genome79.2984 %Subject ←→ Query37.3966
NC_016848:12548*Treponema pallidum subsp. pertenue str. CDC2 chromosome, complete79.3444 %Subject ←→ Query37.5766
NC_021508:745388*Treponema pallidum subsp. pallidum SS14, complete genome94.0717 %Subject ←→ Query41.5767
NC_016848:748873Treponema pallidum subsp. pertenue str. CDC2 chromosome, complete93.8511 %Subject ←→ Query41.8665
NC_016844:748117*Treponema pallidum subsp. pallidum DAL-1 chromosome, complete94.4485 %Subject ←→ Query41.8991
NC_016842:775368*Treponema pallidum subsp. pertenue str. SamoaD chromosome, complete79.0319 %Subject ←→ Query42.0015
NC_016843:747950*Treponema pallidum subsp. pertenue str. Gauthier chromosome,93.1005 %Subject ←→ Query42.0177