Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013008: Escherichia coli O157:H7 str. TW14359 chromosome, complete genome

NCBI: NC_013008

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Escherichia coli O157:H7 str. TW14359 was isolated from spinach during the E. coli outbreak in 2006. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111938*3517423237Island text2.8864537.307328.9312Neighbours41BLASTN11938.gbk
226122627993018705Island text1.5192439.196538.6325Neighbours51BLASTN+IslandViewer 261226.gbk
330695333260025648Island text2.4473437.863421.7041Neighbours41BLASTN+IslandViewer 306953.gbk
491821593658118367Island text1.4932935.189739.3653Neighbours51BLASTN+IslandViewer 918215.gbk
51271621129801326393Island text3.0075237.233624.7537Neighbours41BLASTN+IslandViewer 1271621.gbk
61307392*134409936708Island text1.9380136.500325.6331Neighbours41BLASTN+IslandViewer 1307392.gbk
71354988137825223265Island text2.0007532.076825.2345Neighbours41BLASTN+IslandViewer 1354988.gbk
81513000153963626637Island text3.3248542.197625.6947Neighbours41BLASTN+IslandViewer 1513000.gbk
91715831173742121591Island text1.9743635.601732.6285Neighbours41BLASTN+IslandViewer 1715831.gbk
101761165178542524261Island text1.4779838.211331.3802Neighbours51BLASTN+IslandViewer 1761165.gbk
111971662*199570624045Island text2.1215534.532228.3043Neighbours41BLASTN+1971662.gbk
122007228202632719100Island text2.2576632.62420.9161Neighbours41BLASTN+IslandViewer 2007228.gbk
132561586258459923014Island text1.9720333.069423.5994Neighbours41BLASTNIslandViewer 2561586.gbk
142733203276370830506Island text4.3336344.592620.9859Neighbours35BLASTNIslandViewer 2733203.gbk
152824511284436519855Island text1.9323633.388925.169Neighbours41BLASTN+IslandViewer 2824511.gbk
162851342*287072119380Island text1.8456532.885529.6519Neighbours41BLASTN+IslandViewer 2851342.gbk
172889743290809918357Island text1.4848337.19633.5729Neighbours51BLASTN+IslandViewer 2889743.gbk
182910567*293479124225Island text2.0089634.861426.7268Neighbours41BLASTN+IslandViewer 2910567.gbk
193231414327509143678Island text2.1824833.263131.0119Neighbours41BLASTN+IslandViewer 3231414.gbk
203525428*357111045683Island text1.4573738.33951.7785Neighbours41BLASTN+IslandViewer 3525428.gbk
213761467380616044694Island text2.6918737.615827.2934Neighbours41BLASTN+IslandViewer 3761467.gbk
223911356393799926644Island text4.9117343.747819.9131Neighbours41BLASTN+IslandViewer 3911356.gbk
234595043*461877223730Island text2.9262340.299221.7859Neighbours41BLASTNIslandViewer 4595043.gbk
244643825469490151077Island text2.7684336.152318.6912Neighbours41BLASTN+IslandViewer 4643825.gbk
254738083476372225640Island text3.698142.519622.4223Neighbours41BLASTN+4738083.gbk
265196080521594819869Island text3.9838241.049119.4502Neighbours41BLASTN+5196080.gbk
275382917541973736821Island text1.5399234.083221.6165Neighbours41BLASTN+IslandViewer 5382917.gbk
285411285543582724543Island text2.7236835.197516.8455Neighbours41BLASTN+IslandViewer 5411285.gbk