Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012483: Acidobacterium capsulatum ATCC 51196, complete genome

NCBI: NC_012483

Host Lineage: Acidobacterium capsulatum; Acidobacterium; Acidobacteriaceae; Acidobacteriales; Acidobacteria; Bacteria

General Information: Isolated from acidic mine drainage in Yanahara mine, Okayama, Japan. Acidophilic bacterium. This genus comprises a number of species commonly found in water reservoirs, microbial mats, many different soil types, marine and freshwater sediments, as well as in hot-spring mats and sediments, etc. Furthermore, they sometimes form the dominant group in a habitat. These bacteria are involved in the first step of destruction of biologically complex molecules produced by autotrophic (capable of synthesizing their own nutrients) microorganisms. Acidobacterium capsulatum is an aerobic, mesophilic, chemo-organotroph able to use a variety of carbon sources and to grow up to pH 6.0. The species comprises several strains characterized by orange pigmentation, production of menoquinones as their sole quinones, and branched-chain iso fatty acids as their cell envelope components.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
130784*8496154178Island text1.7725430.54227.1939Neighbours11BLASTN+IslandViewer 30784.gbk
2483425*53209948675Island text1.7212630.213623.2523Neighbours11BLASTN+IslandViewer 483425.gbk
3656397*67916022764Island text1.725430.966535.2446Neighbours11BLASTN+IslandViewer 656397.gbk
472900075509926100Island text1.8144334.527925.5764Neighbours11BLASTN+IslandViewer 729000.gbk
5848750*87237623627Island text1.7957628.610929.4331Neighbours11BLASTNIslandViewer 848750.gbk
697159299266521074Island text1.5532427.495129.7649Neighbours11BLASTN+IslandViewer 971592.gbk
7996555*103631239758Island text1.4992427.241327.5703Neighbours11BLASTN+IslandViewer 996555.gbk
81297799132014722349Island text1.4567529.18940.3581Neighbours11IslandViewer 1297799.gbk
91408500*144907040571Island text1.6091728.12927.9764Neighbours11BLASTN+IslandViewer 1408500.gbk
101567253*159048123229Island text1.5088931.268222.9504Neighbours11BLASTN+IslandViewer 1567253.gbk
111813521183987026350Island text1.4401429.353117.3834Neighbours11BLASTNIslandViewer 1813521.gbk
121841000186829727298Island text1.6668327.730920.1683Neighbours11BLASTN+IslandViewer 1841000.gbk
132338392236269824307Island text1.5500927.450153.4535Neighbours11BLASTN+2338392.gbk
143000619*302570125083Island text1.9589428.289227.8449Neighbours11BLASTN+IslandViewer 3000619.gbk
153144689316858123893Island text1.5028927.361133.6217Neighbours11BLASTNIslandViewer 3144689.gbk
163529895355342023526Island text1.4625327.358943.4889Neighbours11BLASTN+IslandViewer 3529895.gbk
173672768370564832881Island text1.9524334.858521.7621Neighbours11BLASTN+IslandViewer 3672768.gbk
183731542380708575544Island text1.7180731.793623.8606Neighbours11BLASTN+IslandViewer 3731542.gbk