Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_011989: Agrobacterium vitis S4 chromosome 1, complete sequence

NCBI: NC_011989

Host Lineage: Agrobacterium vitis; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Agrobacterium vitis is the causative agent of crown gall disease in grapes. Agrobacterium are Gram-negative, motile, soil-dwelling plant pathogens with the species name given based on the disease phenotype associated with the bacteria. Disease causing Agrobacterium spp. possess a tumor-inducing (Ti) plasmid, which carries genes for the formation of opines. A segment of the Ti plasmid gets transferred to the plant cell and integrates into the host cell genome. The plant cell then starts synthesizing opines, which can be catabolized by Agrobacterium spp, but not by the plant cells.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
159435361759923247Island text1.9886234.595246.2189Neighbours11BLASTN+IslandViewer 594353.gbk
21604939162515920221Island text1.5564128.035832.1309Neighbours11BLASTN+IslandViewer 1604939.gbk
31638261166474526485Island text1.5418127.010426.9135Neighbours11BLASTN+IslandViewer 1638261.gbk
42262881229034827468Island text1.855330.102122.3352Neighbours11BLASTN+IslandViewer 2262881.gbk
52549252257009920848Island text1.3168324.811525.6182Neighbours11BLASTNIslandViewer 2549252.gbk
62795811282253126721Island text1.5857130.938223.7475Neighbours11BLASTN+IslandViewer 2795811.gbk