Pre_GI: BLASTN Hits

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Query: NC_011989:2262881 Agrobacterium vitis S4 chromosome 1, complete sequence

Start: 2262881, End: 2290348, Length: 27468

Host Lineage: Agrobacterium vitis; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Agrobacterium vitis is the causative agent of crown gall disease in grapes. Agrobacterium are Gram-negative, motile, soil-dwelling plant pathogens with the species name given based on the disease phenotype associated with the bacteria. Disease causing Agrobacterium spp. possess a tumor-inducing (Ti) plasmid, which carries genes for the formation of opines. A segment of the Ti plasmid gets transferred to the plant cell and integrates into the host cell genome. The plant cell then starts synthesizing opines, which can be catabolized by Agrobacterium spp, but not by the plant cells.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_009667:19348181934818195721622399Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequence1e-1489.7BLASTN svgBLASTP svg
NC_016024:156000*15600017748221483Candidatus Chloracidobacterium thermophilum B chromosome chromosome1e-0869.9BLASTN svgBLASTP svg
NC_020301:669000*66900071117642177Bartonella vinsonii subsp. berkhoffii str. Winnie, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015161:162000*16200018601224013Deinococcus proteolyticus MRP chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_013757:78083578083581363532801Geodermatophilus obscurus DSM 43160, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_011757:5693584*5693584571331619733Methylobacterium chloromethanicum CM4, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010505:26576832657683268177424092Methylobacterium radiotolerans JCM 2831, complete genome3e-0661.9BLASTN svgBLASTP svg