Pre_GI Gene

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Host: NC_011989 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011989:2549252 Agrobacterium vitis S4 chromosome 1, complete sequence

Host Lineage: Agrobacterium vitis; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Agrobacterium vitis is the causative agent of crown gall disease in grapes. Agrobacterium are Gram-negative, motile, soil-dwelling plant pathogens with the species name given based on the disease phenotype associated with the bacteria. Disease causing Agrobacterium spp. possess a tumor-inducing (Ti) plasmid, which carries genes for the formation of opines. A segment of the Ti plasmid gets transferred to the plant cell and integrates into the host cell genome. The plant cell then starts synthesizing opines, which can be catabolized by Agrobacterium spp, but not by the plant cells.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
25487912549255465hypothetical proteinBLASTP
25501082550458351hypothetical genomic island proteinQuickGO ontologyBLASTP
25509092551268360hypothetical protein
25512992551637339hypothetical protein
25518062552465660transcriptional regulatorQuickGO ontologyBLASTP
25525862553059474hypothetical proteinBLASTP
255326425557802517heat shock proteinQuickGO ontologyBLASTP
255615425580971944hypothetical proteinBLASTP
255937325605811209hypothetical proteinBLASTP
25606342561389756Site-specific DNA methylaseQuickGO ontologyBLASTP
25615702561773204cold shock proteinQuickGO ontologyBLASTP
256212425632271104UDP-galactopyranose mutaseQuickGO ontologyBLASTP
256381025653691560ice nucleation proteinQuickGO ontologyBLASTP
256567525677172043hypothetical proteinBLASTP
256786725691051239peptidaseQuickGO ontologyBLASTP
25694542569900447hypothetical proteinBLASTP