Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_011883: Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,

NCBI: NC_011883

Host Lineage: Desulfovibrio desulfuricans; Desulfovibrio; Desulfovibrionaceae; Desulfovibrionales; Proteobacteria; Bacteria

General Information: Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 was isolated from the rumen of a sheep. D. desulfuricans reduces sulfate to sulfide found in soil, freshwater, saltwater and the intestinal tract of animals. This organism grows anaerobically and utilizes a wide variety of electron acceptors, including sulfate, sulfur, nitrate, and nitrite, as well as others. The nitrate reduction pathway is not expressed while sulfate is available. Alternatively, the sulfate reduction pathway is constitutively expressed when the cells are growing with nitrate reduction. A number of toxic metals are reduced, including uranium (VI), chromium (VI) and iron (III), making this organism of interest as bioremediator. Metal corrosion, a problem that is partly the result of the collective activity of this bacterium, results in billions of dollars in losses each year to the petroleum industry. This organism is responsible for the production of poisonous hydrogen sulfide gas in marine sediments and in terrestrial environments such as drilling sites for petroleum products.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
126949729312423628Island text1.4372727.51724.26Neighbours11BLASTN+IslandViewer 269497.gbk
2303980*33066626687Island text1.853135.703823.6945Neighbours322BLASTN+303980.gbk
348718751019523009Island text1.6798535.136123.9648Neighbours11BLASTN+487187.gbk
4519308*54349424187Island text1.7072330.624830.4107Neighbours11BLASTN+IslandViewer 519308.gbk
51182000*120391521916Island text1.5763129.733431.0371Neighbours14BLASTN1182000.gbk
61314624133418919566Island text1.6019133.189454.4753Neighbours541314624.gbk
71422650144949526846Island text2.0536436.588817.9283Neighbours322BLASTN+1422650.gbk
81478173*150465626484Island text1.8068434.205240.8889Neighbours11BLASTN+1478173.gbk
91601552*162258921038Island text1.4898328.061230.9112Neighbours14BLASTN+1601552.gbk
102031222*205221920998Island text1.7167930.427539.6942Neighbours54BLASTN2031222.gbk
112680380*271559935220Island text4.0355348.493117.2776Neighbours322BLASTN+IslandViewer 2680380.gbk
122826000*284787321874Island text1.7577532.801124.1518Neighbours322BLASTN+IslandViewer 2826000.gbk