Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_011769: Desulfovibrio vulgaris str. 'Miyazaki F', complete genome

NCBI: NC_011769

Host Lineage: Desulfovibrio vulgaris; Desulfovibrio; Desulfovibrionaceae; Desulfovibrionales; Proteobacteria; Bacteria

General Information: Desulfovibrio vulgaris str. 'Miyazaki F' has one of the best characterized nickel/iron hydrogenases. A sulfate reducing bacterium. These organisms typically grow anaerobically, although some can tolerate oxygen, and they utilize a wide variety of electron acceptors, including sulfate, sulfur, nitrate, and nitrite. A number of toxic metals are reduced, including uranium (VI), chromium (VI) and iron (III), making these organisms of interest as bioremediators. Metal corrosion, a problem that is partly the result of the collective activity of these bacteria, produces billions of dollars in losses each year to the petroleum industry. These organisms are also responsible for the production of poisonous hydrogen sulfide gas in marine sediments and in terrestrial environments such as drilling sites for petroleum products. This species is a sulfate reducer commonly found in a variety of soil and aquatic environments.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
124720227380526604Island text2.8698728.912246.5796Neighbours11BLASTN247202.gbk
278749681183124336Island text1.5639318.59832.0319Neighbours11BLASTN+787496.gbk
382052184776227242Island text1.6244221.473827.1127Neighbours11BLASTN+820521.gbk
42016000204859932600Island text1.4993419.855519.0633Neighbours11BLASTN+IslandViewer 2016000.gbk
52248902227566026759Island text1.5177419.272923.3768Neighbours11BLASTN2248902.gbk
62294387*231565121265Island text1.4769620.421926.0507Neighbours11BLASTN+2294387.gbk
72542000*256409922100Island text1.5708120.008523.7666Neighbours11BLASTN+IslandViewer 2542000.gbk
83401353342520623854Island text5.2736132.721448.2455Neighbours14BLASTN+IslandViewer 3401353.gbk
93434744346368228939Island text3.78729.833433.3935Neighbours11BLASTNIslandViewer 3434744.gbk
103712497373232819832Island text1.6620418.171237.0143Neighbours11BLASTN+3712497.gbk