Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010473: Escherichia coli str. K-12 substr. DH10B, complete genome

NCBI: NC_010473

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1118681*13863819958Island text1.5956629.392626.1701Neighbours41BLASTN+IslandViewer 118681.gbk
224742927209924671Island text1.8334338.453317.8374Neighbours41BLASTN+IslandViewer 247429.gbk
327994830350723560Island text1.6866931.286522.6154Neighbours41BLASTN+IslandViewer 279948.gbk
4498252*52418825937Island text1.9882134.634323.1124Neighbours41BLASTN+IslandViewer 498252.gbk
562381065051726708Island text2.2388233.473326.1925Neighbours41BLASTN+IslandViewer 623810.gbk
61245284*127191826635Island text2.5805134.204817.679Neighbours41BLASTNIslandViewer 1245284.gbk
71384000140720523206Island text1.5933929.395722.0916Neighbours41BLASTN+IslandViewer 1384000.gbk
81493983*151640422422Island text1.6729930.778737.5594Neighbours41BLASTN+IslandViewer 1493983.gbk
91607646163120923564Island text1.539630.654231.6969Neighbours41BLASTN+IslandViewer 1607646.gbk
101661000168573524736Island text1.9890330.742321.4703Neighbours41BLASTN+IslandViewer 1661000.gbk
111712984*174109928116Island text1.7896733.920723.2874Neighbours41BLASTN+IslandViewer 1712984.gbk
122119480*215635336874Island text1.544628.954320.052Neighbours41BLASTN+IslandViewer 2119480.gbk
132183567221209928533Island text3.1914139.403523.8912Neighbours41BLASTN+IslandViewer 2183567.gbk
142267851*229294125091Island text1.5973127.559625.2528Neighbours41BLASTN+2267851.gbk
152465844248995824115Island text1.6090233.426615.4708Neighbours41BLASTNIslandViewer 2465844.gbk
162548946*258173732792Island text1.8695327.655217.72Neighbours41BLASTN+IslandViewer 2548946.gbk
172839902*288978149880Island text2.0940835.467324.7941Neighbours41BLASTN+IslandViewer 2839902.gbk
182963951298843424484Island text1.5225630.228622.6337Neighbours41BLASTN+IslandViewer 2963951.gbk
193069529*310059831070Island text4.7551440.724517.1029Neighbours41BLASTN+IslandViewer 3069529.gbk
203273882*329673222851Island text1.9321129.581129.4737Neighbours41BLASTN+IslandViewer 3273882.gbk
213354052*337759923548Island text1.8691330.603527.0613Neighbours41BLASTN+3354052.gbk
223722571375929536725Island text1.6008229.36922.0019Neighbours41BLASTN+3722571.gbk
233883701*391159927899Island text3.3748838.749218.2053Neighbours41BLASTNIslandViewer 3883701.gbk
244256000*427821222213Island text1.5459736.186854.3002Neighbours51BLASTN+4256000.gbk
254409492443038920898Island text1.5517232.70122.6367Neighbours41BLASTN+4409492.gbk
264564590*458823123642Island text1.6330526.571622.6824Neighbours41BLASTN+IslandViewer 4564590.gbk
274596500*461806621567Island text1.5686330.437325.7989Neighbours41BLASTN+IslandViewer 4596500.gbk
284630361465014819788Island text1.8814231.389831.6165Neighbours41BLASTN+IslandViewer 4630361.gbk