Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009831: Shewanella sediminis HAW-EB3, complete genome

NCBI: NC_009831

Host Lineage: Shewanella sediminis; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Shewanella sediminis was isolated from sediment taken at a depth of 215 meters from an unexploded-ordinance-dumping site 50 nautical miles from Halifax Harbor, Canada in the Atlantic Ocean. This organism is able to degrade hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) anaerobically at 10 degrees C. RDX is a member of a family of nitramine compounds which are used in the production of explosives. Shewanella are facultatively anaerobic, Gram-negative bacteria, motile by polar flagella, rod-like, and generally associated with aquatic or marine environments.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1665188952123004Island text1.5963140.612248.6478BLASTN66518.gbk
21255995*127895522961Island text1.3805335.390342.4108Neighbours15BLASTN+1255995.gbk
31539159*156109921941Island text1.4680334.362829.4433Neighbours21BLASTN+IslandViewer 1539159.gbk
42045811206913323323Island text1.3954934.441953.3743Neighbours21BLASTN+2045811.gbk
52884851291271627866Island text2.9197236.33525.3818Neighbours21BLASTN+IslandViewer 2884851.gbk
63092126*311332621201Island text1.6857636.310132.102Neighbours21BLASTN+3092126.gbk
73583856360600922154Island text2.1582635.724732.9547Neighbours21BLASTNIslandViewer 3583856.gbk
83612206365403941834Island text2.8406735.900830.9184Neighbours21BLASTN+IslandViewer 3612206.gbk
94447919447190923991Island text2.1967834.197922.8247Neighbours21BLASTNIslandViewer 4447919.gbk
104539952458002840077Island text1.6585635.496434.3731Neighbours41BLASTN+IslandViewer 4539952.gbk
115107924512773319810Island text1.5313536.234239.3069BLASTN5107924.gbk