Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008463: Pseudomonas aeruginosa UCBPP-PA14, complete genome

NCBI: NC_008463

Host Lineage: Pseudomonas aeruginosa; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain is a human clinical isolate from a human burn patient. It is infectious in mice, Caenorhabditis elegans, Drosophila melanogaster, and Arabidopsis thaliana. Opportunistic pathogen. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This organism is an opportunistic human pathogen. While it rarely infects healthy individuals, immunocompromised patients, like burn victims, AIDS-, cancer- or cystic fibrosis-patients are at increased risk for infection with this environmentally versatile bacteria. It is an important soil bacterium with a complex metabolism capable of degrading polycyclic aromatic hydrocarbons, and producing interesting, biologically active secondary metabolites including quinolones, rhamnolipids, lectins, hydrogen cyanide, and phenazines. Production of these products is likely controlled by complex regulatory networks making Pseudomonas aeruginosa adaptable both to free-living and pathogenic lifestyles. The bacterium is naturally resistant to many antibiotics and disinfectants, which makes it a difficult pathogen to treat.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1282565*32073638172Island text2.2521625.4822.6827Neighbours11BLASTNIslandViewer 282565.gbk
2632869*65598423116Island text1.7872621.043427.2156Neighbours11BLASTN632869.gbk
31188951*120759918649Island text1.7536620.482717.1854Neighbours11BLASTN+IslandViewer 1188951.gbk
41223012*124137318362Island text1.5102623.279440.5896Neighbours11BLASTN+1223012.gbk
51293079133019337115Island text1.5230121.681913.9639Neighbours11BLASTN+IslandViewer 1293079.gbk
61756434177764821215Island text2.1404923.337240.8689Neighbours11BLASTN+IslandViewer 1756434.gbk
71912348*195418241835Island text3.7991342.711836.9609Neighbours11BLASTN+IslandViewer 1912348.gbk
82017607*204360726001Island text5.4780939.625540.6626Neighbours14BLASTN2017607.gbk
92467219*250339236174Island text2.7149529.62229.5362Neighbours11BLASTNIslandViewer 2467219.gbk
102654014*267605522042Island text1.7486822.282322.3013Neighbours11BLASTN+2654014.gbk
112848568287992931362Island text3.7393336.718743.2518Neighbours11BLASTNIslandViewer 2848568.gbk
123168837319814929313Island text4.4652937.233523.1319Neighbours11BLASTN+IslandViewer 3168837.gbk
133394000341610022101Island text2.1002818.886829.5956Neighbours11BLASTN+3394000.gbk
143503576*352773524160Island text2.1177522.89429.3526Neighbours11BLASTN3503576.gbk
154133700415823024531Island text2.4358723.790120.134Neighbours11BLASTN4133700.gbk
164342119436920327085Island text2.2770123.271825.4637Neighbours11BLASTN+IslandViewer 4342119.gbk
174389721*441663526915Island text2.9526128.234442.1705Neighbours11BLASTN+4389721.gbk
184566976*460307636101Island text2.8220925.821130.0834Neighbours11BLASTN+IslandViewer 4566976.gbk
194743296476909925804Island text4.2866533.779241.1564Neighbours11BLASTN+IslandViewer 4743296.gbk
204867504*489101123508Island text1.7319320.494815.7196Neighbours11BLASTN+IslandViewer 4867504.gbk
215246954530671059757Island text2.0720122.582535.4031Neighbours11BLASTN+IslandViewer 5246954.gbk
225313527535528941763Island text1.9331922.331133.7053Neighbours11BLASTNIslandViewer 5313527.gbk
235364428*539303028603Island text2.6820827.044835.9657Neighbours11BLASTN5364428.gbk