Query: NC_008463:4342119 Pseudomonas aeruginosa UCBPP-PA14, complete genome
Start: 4342119, End: 4369203, Length: 27085
Host Lineage: Pseudomonas aeruginosa; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria
General Information: This strain is a human clinical isolate from a human burn patient. It is infectious in mice, Caenorhabditis elegans, Drosophila melanogaster, and Arabidopsis thaliana. Opportunistic pathogen. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This organism is an opportunistic human pathogen. While it rarely infects healthy individuals, immunocompromised patients, like burn victims, AIDS-, cancer- or cystic fibrosis-patients are at increased risk for infection with this environmentally versatile bacteria. It is an important soil bacterium with a complex metabolism capable of degrading polycyclic aromatic hydrocarbons, and producing interesting, biologically active secondary metabolites including quinolones, rhamnolipids, lectins, hydrogen cyanide, and phenazines. Production of these products is likely controlled by complex regulatory networks making Pseudomonas aeruginosa adaptable both to free-living and pathogenic lifestyles. The bacterium is naturally resistant to many antibiotics and disinfectants, which makes it a difficult pathogen to treat.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_011770:4542183 | 4542183 | 4569160 | 26978 | Pseudomonas aeruginosa LESB58, complete genome | 0 | 26080 | BLASTN svg | BLASTP svg |
NC_002516:776787 | 776787 | 802239 | 25453 | Pseudomonas aeruginosa PAO1, complete genome | 0 | 2432 | BLASTN svg | BLASTP svg |
NC_009439:2337024* | 2337024 | 2362354 | 25331 | Pseudomonas mendocina ymp, complete genome | 4e-64 | 254 | BLASTN svg | BLASTP svg |
NC_015410:3502099* | 3502099 | 3528159 | 26061 | Pseudomonas mendocina NK-01 chromosome, complete genome | 2e-63 | 252 | BLASTN svg | BLASTP svg |
NC_015410:1202370* | 1202370 | 1228248 | 25879 | Pseudomonas mendocina NK-01 chromosome, complete genome | 1e-61 | 246 | BLASTN svg | BLASTP svg |
NC_015410:1324313* | 1324313 | 1350875 | 26563 | Pseudomonas mendocina NK-01 chromosome, complete genome | 3e-49 | 204 | BLASTN svg | BLASTP svg |
NC_015410:2838132* | 2838132 | 2864051 | 25920 | Pseudomonas mendocina NK-01 chromosome, complete genome | 1e-48 | 202 | BLASTN svg | BLASTP svg |
NC_004337:3590323* | 3590323 | 3952993 | 362671 | Shigella flexneri 2a str. 301, complete genome | 3e-40 | 174 | BLASTN svg | BLASTP svg |
NC_008825:564392* | 564392 | 591566 | 27175 | Methylibium petroleiphilum PM1, complete genome | 2e-32 | 149 | BLASTN svg | BLASTP svg |
NC_008463:3168837 | 3168837 | 3198149 | 29313 | Pseudomonas aeruginosa UCBPP-PA14, complete genome | 2e-32 | 149 | BLASTN svg | BLASTP svg |
NC_007951:4608560* | 4608560 | 4636591 | 28032 | Burkholderia xenovorans LB400 chromosome 1, complete sequence | 3e-31 | 145 | BLASTN svg | BLASTP svg |
NC_009648:1541699* | 1541699 | 1600109 | 58411 | Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome | 3e-25 | 125 | BLASTN svg | BLASTP svg |
NC_007510:3340008 | 3340008 | 3375417 | 35410 | Burkholderia sp. 383 chromosome 1, complete sequence | 4e-21 | 111 | BLASTN svg | BLASTP svg |
NC_009439:1174432* | 1174432 | 1199736 | 25305 | Pseudomonas mendocina ymp, complete genome | 6e-20 | 107 | BLASTN svg | BLASTP svg |
NC_013716:1756545* | 1756545 | 1776943 | 20399 | Citrobacter rodentium ICC168, complete genome | 9e-16 | 93.7 | BLASTN svg | BLASTP svg |
NC_010505:400950 | 400950 | 425376 | 24427 | Methylobacterium radiotolerans JCM 2831, complete genome | 9e-16 | 93.7 | BLASTN svg | BLASTP svg |
NC_018868:282738* | 282738 | 308170 | 25433 | Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genome | 2e-13 | 85.7 | BLASTN svg | BLASTP svg |
NC_009092:2282437* | 2282437 | 2327441 | 45005 | Shewanella loihica PV-4, complete genome | 2e-13 | 85.7 | BLASTN svg | BLASTP svg |
NC_015856:3536441* | 3536441 | 3563392 | 26952 | Collimonas fungivorans Ter331 chromosome, complete genome | 5e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_020063:2449554* | 2449554 | 2472898 | 23345 | Enterobacteriaceae bacterium strain FGI 57, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_014375:1146328* | 1146328 | 1177099 | 30772 | Brevundimonas subvibrioides ATCC 15264 chromosome, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_015733:3923800* | 3923800 | 3946797 | 22998 | Pseudomonas putida S16 chromosome, complete genome | 8e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_010172:480000* | 480000 | 530366 | 50367 | Methylobacterium extorquens PA1, complete genome | 8e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_008278:1472709 | 1472709 | 1496530 | 23822 | Frankia alni ACN14a, complete genome | 8e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_011149:1429523* | 1429523 | 1498087 | 68565 | Salmonella enterica subsp. enterica serovar Agona str. SL483, | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_001263:662666 | 662666 | 689956 | 27291 | Deinococcus radiodurans R1 chromosome 1, complete sequence | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |