Pre_GI Gene

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Host: NC_008228 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008228:1404126 Pseudoalteromonas atlantica T6c, complete genome

Host Lineage: Pseudoalteromonas atlantica; Pseudoalteromonas; Pseudoalteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Isolated from a biofilm from San Diego Bay in California. Marine biofilm bacterium associated with shell disease in shellfish. A common marine bacterium that exists both in the water column, and in biofilms attached to surfaces. This organism produces a well characterized, commercially important agarase. Pseudoalteromonas atlantica has been isolated from lesions on crabs with shell disease. Shell disease is characterized by progressive degradation of the shell, often leading to an infection of the hemolymph (blood) and may be caused by Pseudoalteromonas, Alteromonas, Vibrio, or other marine organisms. In addition to producing extracellular enzymes which attack the shell, Pseudoalteromonas atlantica produces a the lipopolysaccharide which has been shown to be a potential virulence factor in shell disease.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
14041261404761636peptidyl-prolyl cis-trans isomerase cyclophilin typeQuickGO ontologyBLASTP
14049891405546558hypothetical proteinBLASTP
140571914074761758potassium efflux system proteinQuickGO ontologyBLASTP
140748014090901611hypothetical proteinBLASTP
14090901409989900Protein-tyrosine kinaseQuickGO ontologyBLASTP
140998614115691584lipopolysaccharide biosynthesisQuickGO ontologyBLASTP
14115991412234636polysaccharide export proteinQuickGO ontologyBLASTP
141240814138201413sugar transferaseQuickGO ontologyBLASTP
14138231414668846polysaccharide deacetylaseQuickGO ontologyBLASTP
141469014161831494eight transmembrane protein EpsHQuickGO ontologyBLASTP
14161951417094900methyltransferase FkbM familyQuickGO ontologyBLASTP
141711214181281017acyltransferase 3QuickGO ontologyBLASTP
141816414192971134hypothetical proteinBLASTP
14193261419907582hypothetical proteinBLASTP
141990414210341131glycosyl transferase group 1QuickGO ontologyBLASTP
14215331422459927glycosyl transferase family 2QuickGO ontologyBLASTP
14225921423407816sulfotransferaseQuickGO ontologyBLASTP
142344014246451206hypothetical proteinBLASTP
14246381424982345hypothetical protein
142497914265711593Choline dehydrogenase and related flavoproteins-likeQuickGO ontologyBLASTP
142656814278061239O-antigen polymeraseQuickGO ontologyBLASTP
142797414290321059acyltransferase 3QuickGO ontologyBLASTP
14291761430093918glycosyl transferase family 2QuickGO ontologyBLASTP
143009614315621467polysaccharide biosynthesis proteinQuickGO ontologyBLASTP
143155914326411083glycosyl transferase group 1QuickGO ontologyBLASTP
143268514345651881hypothetical protein
143466014361321473polysaccharide biosynthesis proteinQuickGO ontologyBLASTP