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Query: NC_008228:1404126:1426568 Pseudoalteromonas atlantica T6c, complete genome

Start: 1426568, End: 1427806, Length: 1239

Host Lineage: Pseudoalteromonas atlantica; Pseudoalteromonas; Pseudoalteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Isolated from a biofilm from San Diego Bay in California. Marine biofilm bacterium associated with shell disease in shellfish. A common marine bacterium that exists both in the water column, and in biofilms attached to surfaces. This organism produces a well characterized, commercially important agarase. Pseudoalteromonas atlantica has been isolated from lesions on crabs with shell disease. Shell disease is characterized by progressive degradation of the shell, often leading to an infection of the hemolymph (blood) and may be caused by Pseudoalteromonas, Alteromonas, Vibrio, or other marine organisms. In addition to producing extracellular enzymes which attack the shell, Pseudoalteromonas atlantica produces a the lipopolysaccharide which has been shown to be a potential virulence factor in shell disease.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_019892:6825739:6825739682573968270071269Singulisphaera acidiphila DSM 18658 chromosome, complete genomeLipid A core--O-antigen ligase-like protein6e-1168.9
NC_012108:2220983:2242434224243422437621329Desulfobacterium autotrophicum HRM2, complete genomeRfaL3e-0963.5
NC_008702:3580380:3601034360103436023801347Azoarcus sp. BH72, complete genomeconserved hypothetical membrane protein2e-0860.5
NC_015497:3739556:3756835375683537581451311Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomeO-antigen polymerase5e-0859.3
NC_017506:1996652:2030965203096520323351371Marinobacter adhaerens HP15 chromosome, complete genomeO-antigen polymerase2e-0757.8
NC_014355:2775979:2790265279026527915931329Candidatus Nitrospira defluvii, complete genomeputative o-antigen polymerase1e-0757.8
NC_018679:3197347:3207423320742332087331311Alteromonas macleodii str. 'Balearic Sea AD45' chromosome, completeO-antigen polymerase6e-0755.8
NC_009483:2640403:2704826270482627061031278Geobacter uraniireducens Rf4 chromosome, complete genomeO-antigen polymerase3e-0653.5
NC_020541:3156500:3204476320447632058011326Rhodanobacter sp. 2APBS1, complete genomeputative O-glycosylation ligase, exosortase system type 1-associated5e-0652.8
NC_010995:4083960:4088906408890640901951290Cellvibrio japonicus Ueda107, complete genomeO-antigen polymerase family protein5e-0652.8
NC_018868:1960542:197560819756081976231624Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomehypothetical protein5e-0652.4