Pre_GI Gene

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Host: NC_004129 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004129:2328491 Pseudomonas fluorescens Pf-5, complete genome

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
23284912328703213hypothetical protein
23297192329994276cold shock protein capa fragment-related proteinQuickGO ontologyBLASTP
23302242330523300hypothetical proteinBLASTP
233090823328301923threonyl-tRNA synthetaseQuickGO ontologyBLASTP
23328302333381552translation initiation factor IF-3QuickGO ontologyBLASTP
2333442233363619550S ribosomal protein L35QuickGO ontologyBLASTP
2333667233402335750S ribosomal protein L20QuickGO ontologyBLASTP
233413423351501017phenylalanyl-tRNA synthetase alpha subunitQuickGO ontologyBLASTP
233518623375642379phenylalanyl-tRNA synthetase beta subunitQuickGO ontologyBLASTP
23375682337870303integration host factor alpha subunitQuickGO ontologyBLASTP
23378512338207357transcriptional regulator MerR familyQuickGO ontologyBLASTP
2338296233837277tRNA-ProQuickGO ontologyBLASTP
23394912339670180hypothetical proteinBLASTP
23399192340170252hypothetical proteinBLASTP
23434472344091645prophage LambdaSo minor tail protein LQuickGO ontologyBLASTP
23441152344513399prophage LambdaSo tail assembly protein K putativeQuickGO ontologyBLASTP
23471712347848678hypothetical proteinBLASTP
23490532349262210hypothetical proteinBLASTP
23497142350442729transcriptional regulator CroCI familyQuickGO ontologyBLASTP
23509552351797843putidacin L1QuickGO ontologyBLASTP
23519082352459552acetyltransferase putativeQuickGO ontologyBLASTP
23525052352687183hypothetical protein
23526962353634939hypothetical protein
23537342353838105hypothetical protein
23539822354422441pentapeptide repeat family protein putativeQuickGO ontologyBLASTP
23544232355340918transcriptional regulator LysR familyQuickGO ontologyBLASTP
235543623566621227major facilitator superfamily protein superfamilyQuickGO ontologyBLASTP
23566652357489825hypothetical protein
235764923588271179major facilitator family proteinQuickGO ontologyBLASTP
23588992359834936transcriptional regulator LysR familyQuickGO ontologyBLASTP
235988423612301347aspartate aminotransferaseQuickGO ontologyBLASTP