Pre_GI: BLASTP Hits

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Query: NC_004129:2328491:2337851 Pseudomonas fluorescens Pf-5, complete genome

Start: 2337851, End: 2338207, Length: 357

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007492:2203220:220739422073942207750357Pseudomonas fluorescens PfO-1, complete genomeTranscriptional Regulator, MerR family6e-64242
NC_012660:4558122:458437045843704584726357Pseudomonas fluorescens SBW25 chromosome, complete genomeMerR family transcriptional regulator2e-62236
NC_015410:3209954:322116632211663221522357Pseudomonas mendocina NK-01 chromosome, complete genomeMerR family transcriptional regulator2e-61234
NC_009434:2577717:258434225843422584698357Pseudomonas stutzeri A1501, complete genometranscriptional regulator, putative4e-61233
NC_015740:2407500:244142624414262441782357Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completetranscriptional regulator4e-61233
NC_008463:2467219:247414224741422474498357Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative transcriptional regulator1e-60231
NC_009656:2512733:251965625196562520012357Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein1e-60231
NC_018080:2288700:229562322956232295979357Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein1e-60231
NC_008027:2051821:205449020544902054846357Pseudomonas entomophila L48, complete genometranscriptional regulator, MerR family7e-61231
NC_009512:3618055:363100136310013631357357Pseudomonas putida F1, complete genomeputative transcriptional regulator, MerR family5e-60229
NC_002947:2809591:281653028165302816886357Pseudomonas putida KT2440, complete genomehypothetical protein5e-60229
NC_017506:1100679:110770711077071108072366Marinobacter adhaerens HP15 chromosome, complete genomeMerR family transcriptional regulator2e-53207
NC_018691:3525430:356765135676513568007357Alcanivorax dieselolei B5 chromosome, complete genomeMerR-family transcriptional regulator2e-50197
NC_007645:4677965:469184846918484692204357Hahella chejuensis KCTC 2396, complete genomepredicted transcriptional regulator2e-48190
NC_018868:569423:616716616716617084369Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genometranscriptional regulator2e-47187
NC_017271:2906000:292064229206422920998357Xanthomonas campestris pv. raphani 756C chromosome, completetranscription regulator protein8e-45178
NC_003902:2903493:291810829181082918464357Xanthomonas campestris pv. campestris str. ATCC 33913, completehypothetical protein2e-44177
NC_007086:1988000:199275519927551993111357Xanthomonas campestris pv. campestris str. 8004, complete genomehypothetical protein2e-44177
NC_011770:2499432:250391925039192504176258Pseudomonas aeruginosa LESB58, complete genomehypothetical protein2e-40164
NC_002516:3079850:309947330994733099730258Pseudomonas aeruginosa PAO1, complete genomehypothetical protein2e-40164
NC_013166:1841446:185405118540511854401351Kangiella koreensis DSM 16069, complete genometranscriptional regulator, MerR family2e-38157
NC_008702:1153344:116962811696281170008381Azoarcus sp. BH72, complete genomeputative MerR-family transcriptional regulator3e-33140
NC_007298:2856104:286730228673022867679378Dechloromonas aromatica RCB, complete genomeregulatory protein, MerR8e-33138
NC_011992:1505106:152295515229551523383429Acidovorax ebreus TPSY, complete genometranscriptional regulator, MerR family5e-32136
NC_015731:867377:917411917411917791381Nitrosomonas sp. Is79A3 chromosome, complete genomeMarR family transcriptional regulator5e-32135
NC_014307:1619000:162308516230851623525441Ralstonia solanacearum CFBP2957 chromosome, complete genomeMerR family transcriptional regulator6e-32135
NC_014910:2585747:258727025872702587695426Alicycliphilus denitrificans BC chromosome, complete genomeregulatory protein merr9e-32135
NC_016002:1326500:133389613338961334249354Pseudogulbenkiania sp. NH8B, complete genomeMerR family transcriptional regulator1e-31134
NC_013959:1723037:173951817395181739886369Sideroxydans lithotrophicus ES-1 chromosome, complete genometranscriptional regulator, MerR family4e-31133
NC_014931:4234288:425234542523454252803459Variovorax paradoxus EPS chromosome, complete genomeregulatory protein MerR1e-30131
NC_008781:2981868:298883829888382989326489Polaromonas naphthalenivorans CJ2, complete genomeputative transcriptional regulator, MerR family1e-29128
NC_004757:1021355:103670810367081037100393Nitrosomonas europaea ATCC 19718, complete genomeBacterial regulatory proteins, MerR family1e-28125
NC_015222:2089767:209621620962162096593378Nitrosomonas sp. AL212 chromosome, complete genomeregulatory protein MerR1e-28125
NC_012560:2026483:204147520414752041642168Azotobacter vinelandii DJ, complete genometranscriptional regulator, MerR family2e-1994
NC_021150:2026496:204148820414882041655168Azotobacter vinelandii CA6, complete genometranscriptional regulator, MerR family2e-1994
NC_007498:1666242:167363416736341673984351Pelobacter carbinolicus DSM 2380, complete genomepredicted transcriptional regulators3e-1890.5
NC_014972:1621850:162916616291661629570405Desulfobulbus propionicus DSM 2032 chromosome, complete genomeregulatory protein MerR1e-1788.2
NC_009483:3024115:304686830468683047221354Geobacter uraniireducens Rf4 chromosome, complete genomeMerR family transcriptional regulator8e-1785.9
NC_007517:1561466:158657415865741586924351Geobacter metallireducens GS-15, complete genometranscriptional regulator, MerR family1e-1582
NC_002939:1634843:166922616692261669579354Geobacter sulfurreducens PCA, complete genometranscriptional regulator, putative2e-1580.9
NC_014010:175500:178560178560178934375Candidatus Puniceispirillum marinum IMCC1322 chromosome, completeTranscriptional Regulator, MerR family3e-1477.4
NC_015717:2479394:249864424986442499174531Hyphomicrobium sp. MC1, complete genomeputative MerR family transcriptional regulator5e-1476.6
NC_006831:157895:167790167790168161372Ehrlichia ruminantium str. Gardel, complete genomehypothetical protein7e-1475.9
NC_006832:160222:170244170244170615372Ehrlichia ruminantium str. Welgevonden, complete genomehypothetical protein7e-1475.9
NC_016026:997225:9998529998521000469618Micavibrio aeruginosavorus ARL-13 chromosome, complete genomemerR regulatory family protein1e-1375.5
NC_007925:2892371:290705329070532907811759Rhodopseudomonas palustris BisB18, complete genometranscriptional regulator, MerR family2e-1270.9
NC_008609:2446246:248378824837882484156369Pelobacter propionicus DSM 2379, complete genometranscriptional regulator, MerR family3e-1270.5
NC_004463:5540924:556529855652985565876579Bradyrhizobium japonicum USDA 110, complete genomehypothetical protein5e-1269.7
NC_013162:1176000:117830311783031178635333Capnocytophaga ochracea DSM 7271, complete genometranscriptional regulator, MerR family4e-1166.6
NC_004663:5194400:520911652091165209457342Bacteroides thetaiotaomicron VPI-5482, complete genometranscriptional regulator4e-1063.5
NC_014414:167803:179245179245179694450Parvularcula bermudensis HTCC2503 chromosome, complete genomehypothetical protein6e-1062.8
NC_015732:2880801:289764628976462897993348Spirochaeta caldaria DSM 7334 chromosome, complete genomeregulatory protein MerR8e-1062.4
NC_015388:1678000:167871716787171679016300Desulfobacca acetoxidans DSM 11109 chromosome, complete genomeregulatory protein MerR2e-0857.8
NC_020260:1111130:111503111150311115774744Cronobacter sakazakii Sp291, complete genomehypothetical protein1e-0755.1
NC_009778:1070000:107294310729431073686744Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein1e-0755.1
NC_009800:1254409:126054612605461261277732Escherichia coli HS, complete genometranscriptional regulator mlrA1e-0548.9
NC_010473:1245284:125279212527921253523732Escherichia coli str. K-12 substr. DH10B, complete genomepredicted DNA-binding transcriptional regulator1e-0548.9
CP002516:2786000:279893827989382799669732Escherichia coli KO11, complete genometranscriptional regulator, MerR family1e-0548.9
CU928160:1232510:124001412400141240745732Escherichia coli IAI1 chromosome, complete genomeputative DNA-binding transcriptional regulator1e-0548.9
NC_011748:1300863:130836713083671309098732Escherichia coli 55989, complete genomeputative DNA-binding transcriptional regulator1e-0548.9
NC_000913:1188999:121255112125511213282732Escherichia coli K12, complete genomepredicted DNA-binding transcriptional regulator1e-0548.9
CU928145:1300863:130836713083671309098732Escherichia coli 55989 chromosome, complete genomeputative DNA-binding transcriptional regulator1e-0548.9
CP002185:1298675:130617913061791306910732Escherichia coli W, complete genomepredicted DNA-binding transcriptional regulator1e-0548.9
NC_010468:2699000:271231327123132713044732Escherichia coli ATCC 8739, complete genometranscriptional regulator, MerR family1e-0548.9
AC_000091:1191353:121490512149051215636732Escherichia coli W3110 DNA, complete genomepredicted DNA-binding transcriptional regulator1e-0548.9
NC_013941:1460144:146559714655971466328732Escherichia coli O55:H7 str. CB9615 chromosome, complete genometranscriptional regulator mlrA1e-0548.9
NC_010498:1995500:200765220076522008383732Escherichia coli SMS-3-5, complete genometranscriptional regulator mlrA1e-0548.9
NC_011750:1978801:198996919899691990700732Escherichia coli IAI39 chromosome, complete genomeputative DNA-binding transcriptional regulator1e-0548.9
NC_011751:1446073:145959314595931460324732Escherichia coli UMN026 chromosome, complete genomeputative DNA-binding transcriptional regulator1e-0548.9
AP010958:1339263:134676713467671347498732Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted DNA-binding transcriptional regulator1e-0548.9
NC_010658:1193225:120299012029901203721732Shigella boydii CDC 3083-94, complete genometranscriptional regulator mlrA1e-0548.9
NC_011741:1232510:124001412400141240745732Escherichia coli IAI1 chromosome, complete genomeputative DNA-binding transcriptional regulator1e-0548.9
NC_011745:1287714:129563412956341296365732Escherichia coli ED1a chromosome, complete genomeputative DNA-binding transcriptional regulator9e-0648.9
NC_011742:1221416:123057212305721231303732Escherichia coli S88 chromosome, complete genomeDNA-binding transcriptional regulator9e-0648.9
NC_007946:1280508:128966412896641290395732Escherichia coli UTI89, complete genomehypothetical transcriptional regulator YcgE9e-0648.9
NC_008563:1217804:122696012269601227691732Escherichia coli APEC O1, complete genomeputative transcriptional regulator9e-0648.9
NC_008253:1228485:123630212363021237033732Escherichia coli 536, complete genomehypothetical transcriptional regulator YcgE9e-0648.9
NC_004431:1443968:145311814531181453849732Escherichia coli CFT073, complete genomeHypothetical transcriptional regulator ycgE9e-0648.9
NC_016902:2786000:279893827989382799669732Escherichia coli KO11FL chromosome, complete genomeMerR family transcriptional regulator1e-0548.9
NC_013364:1477248:150816915081691508900732Escherichia coli O111:H- str. 11128, complete genomeputative DNA-binding transcriptional regulator1e-0548.9
NC_013361:1634226:164035616403561641087732Escherichia coli O26:H11 str. 11368 chromosome, complete genomeDNA-binding transcriptional regulator1e-0548.9
NC_013353:1339263:134676713467671347498732Escherichia coli O103:H2 str. 12009, complete genomeDNA-binding transcriptional regulator1e-0548.9
NC_012967:1205985:121348912134891214220732Escherichia coli B str. REL606 chromosome, complete genomeputative DNA-binding transcriptional regulator1e-0548.9
NC_012947:2566754:258016725801672580898732Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeMerR family transcriptional regulator1e-0548.9
NC_012759:1093764:110127211012721102003732Escherichia coli BW2952 chromosome, complete genomeputative DNA-binding transcriptional regulator1e-0548.9
NC_011601:1315746:132239113223911323122732Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeDNA-binding transcriptional regulator8e-0648.9