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Query: NC_004129:2328491:2357649 Pseudomonas fluorescens Pf-5, complete genome

Start: 2357649, End: 2358827, Length: 1179

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010557:679656:7145787145787157891212Burkholderia ambifaria MC40-6 chromosome 3, complete sequencemajor facilitator superfamily MFS_11e-56220
NC_008392:1029134:1046210104621010473611152Burkholderia cepacia AMMD chromosome 3, complete sequencemajor facilitator superfamily MFS_15e-56218
NC_010505:4676403:4693018469301846942441227Methylobacterium radiotolerans JCM 2831, complete genomemajor facilitator superfamily MFS_15e-48192
NC_014364:4488875:4519227451922745203841158Spirochaeta smaragdinae DSM 11293 chromosome, complete genomemajor facilitator superfamily MFS_11e-0757.8