Pre_GI: BLASTP Hits

Some Help

Query: NC_020134:845164:846338 Clostridium stercorarium subsp. stercorarium DSM 8532, complete

Start: 846338, End: 846811, Length: 474

Host Lineage: Clostridium stercorarium; Clostridium; unclassified Ruminococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Lignocellulosic biomass has great potential as an abundant and renewable source of fermentable sugars through enzymic saccharification. Clostridium stercorarium is a catabolically versatile bacterium producing a wide range of hydrolases for degradation of biomass. Together with Clostridium thermocellum, Clostridium aldrichii and other cellulose degraders, it forms group I of the clostridia. It is moderately thermophilic, with an optimum growth temperature of 65 degrees C, and has repeatedly been isolated from self-heated compost. The two-component cellulase system of C. stercorarium has been investigated thoroughly. Due to its ability to utilize the various polysaccharides present in biomass it is especially suited for the fermentation of hemicellulose to organic solvents. Some isolates have been used in Japan in a single-step ethanol-fermenting pilot-process with lignocellulosic biomass as substrate.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007614:2517226:252214225221422522444303Nitrosospira multiformis ATCC 25196 chromosome 1, completeCompetence protein ComEA helix-hairpin-helix region1e-1375.9
NC_016012:396910:405710405710406408699Candidatus Arthromitus sp. SFB-rat-Yit, complete genomeputative comE operon protein 13e-1374.3
NC_012660:1804610:183339718333971833747351Pseudomonas fluorescens SBW25 chromosome, complete genomehypothetical protein3e-1270.9
NC_009656:1994392:202881820288182029141324Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein5e-1270.5
NC_014752:324832:335935335935336234300Neisseria lactamica ST-640, complete genomeDNA transport competence protein5e-1270.1
NC_009828:1530732:154122115412211541763543Thermotoga lettingae TMO, complete genomecompetence protein ComEA helix-hairpin-helix repeat protein6e-1270.1
NC_013173:3679326:368153736815373681842306Desulfomicrobium baculatum DSM 4028, complete genome1e-1169.3
NC_009512:4375452:437890843789084379243336Pseudomonas putida F1, complete genomecompetence protein ComEA helix-hairpin-helix repeat protein9e-1269.3
NC_008767:1888950:190706619070661907530465Neisseria meningitidis FAM18, complete genomeputative DNA transport competence protein8e-1269.3
NC_017986:1128879:113550411355041135854351Pseudomonas putida ND6 chromosome, complete genomecompetence protein ComEA helix-hairpin-helix repeat protein1e-1168.9
NC_007492:4563981:456685345668534567188336Pseudomonas fluorescens PfO-1, complete genomeCompetence protein ComEA helix-hairpin-helix region1e-1168.9
NC_012785:20454:420894208942883795Kosmotoga olearia TBF 19.5.1, complete genomecompetence protein ComEA helix-hairpin-helix repeat protein1e-1168.6
NC_002516:3519000:352416135241613524490330Pseudomonas aeruginosa PAO1, complete genomehypothetical protein2e-1168.2
NC_020209:997385:102935310293531029685333Pseudomonas poae RE*1-1-14, complete genomehypothetical protein2e-1168.2
NC_007645:2408125:243129424312942431599306Hahella chejuensis KCTC 2396, complete genomeDNA uptake protein and related DNA-binding protein8e-1166.2
NC_004757:1021355:102587410258741026236363Nitrosomonas europaea ATCC 19718, complete genomeputative DNA transport competence protein, ComEA2e-1065.1
NC_004129:4993974:500111650011165001445330Pseudomonas fluorescens Pf-5, complete genomecompetence protein comEA2e-1064.7
NC_012559:2353236:236990323699032370388486Laribacter hongkongensis HLHK9, complete genomeProbable DNA transport competence protein4e-1063.9
NC_009092:2902171:292841329284132928712300Shewanella loihica PV-4, complete genomecompetence protein ComEA helix-hairpin-helix repeat protein7e-1063.2
NC_008322:2983951:300494630049463005311366Shewanella sp. MR-7, complete genomecompetence protein ComEA helix-hairpin-helix repeat protein7e-1062.8
NC_015873:1557999:157857115785711579095525Megasphaera elsdenii DSM 20460, complete genomeComEA protein9e-1062.8
NC_013416:1429881:143003814300381430367330Aggregatibacter actinomycetemcomitans D11S-1, complete genomeComE operon protein 11e-0962.4
NC_007575:319119:338582338582338833252Sulfurimonas denitrificans DSM 1251, complete genomehypothetical protein1e-0962
NC_013739:3006719:302441630244163025108693Conexibacter woesei DSM 14684, complete genomecompetence protein ComEA helix-hairpin-helix repeat protein3e-0961.2
NC_015497:1287877:133541513354151335723309Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomecompetence protein ComEA helix-hairpin-helix repeat protein3e-0960.8
NC_014220:1732254:173468217346821735299618Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomecompetence protein ComEA helix-hairpin-helix repeat protein4e-0960.5
NC_008599:596849:609772609772610176405Campylobacter fetus subsp. fetus 82-40, complete genomehypothetical protein6e-0960.1
NC_014541:1231021:123408112340811234365285Ferrimonas balearica DSM 9799 chromosome, complete genomecompetence protein ComEA helix-hairpin-helix repeat protein6e-0960.1
NC_015672:2236000:224043822404382240698261Flexistipes sinusarabici DSM 4947 chromosome, complete genomecompetence protein ComEA helix-hairpin-helix repeat protein2e-0858.5
NC_014371:177536:2087352087352114672733Prevotella melaninogenica ATCC 25845 chromosome chromosome II,Tex-like protein N-terminal domain protein1e-0652.4
NC_009663:89224:107745107745108080336Sulfurovum sp. NBC37-1, complete genomeDNA uptake protein1e-0652
NC_006361:1547034:1547034154703415486321599Nocardia farcinica IFM 10152, complete genomeputative DNA-binding protein2e-0651.2
NC_003155:6667928:6666768666676866679311164Streptomyces avermitilis MA-4680, complete genomeDNA-binding protein3e-0650.8
NC_016510:1999621:2016451201645120185742124Flavobacterium columnare ATCC 49512 chromosome, complete genomeputative RNA binding protein with S1 RNA-binding domain4e-0650.8
NC_013855:670285:6717936717936741472355Azospirillum sp. B510 plasmid pAB510a, complete sequenceS1 RNA-binding domain-containing protein6e-0650.1