Pre_GI: BLASTP Hits

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Query: NC_017328:3088907:3137193 Shigella flexneri 2002017 chromosome, complete genome

Start: 3137193, End: 3137681, Length: 489

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004337:3049118:309748830974883097976489Shigella flexneri 2a str. 301, complete genomehypothetical protein2e-75280
NC_004741:3041294:308831530883153088803489Shigella flexneri 2a str. 2457T, complete genomehypothetical protein2e-75280
NC_012967:3769499:379446837944683794956489Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein3e-72270
NC_012947:44512:494814948149969489Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein3e-72270
NC_008253:3161311:317513231751323175620489Escherichia coli 536, complete genomehypothetical protein1e-67254
NC_011083:4547825:456462945646294565117489Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein9e-66248
NC_013361:5580741:558249355824935582981489Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein3e-65247
NC_011745:5114500:511763351176335118121489Escherichia coli ED1a chromosome, complete genomehypothetical protein3e-65247
NC_011745:3405520:342543534254353425923489Escherichia coli ED1a chromosome, complete genomehypothetical protein1e-64244
NC_002695:4584177:458417745841774584668492Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein8e-64242
NC_002655:4653160:465316046531604653651492Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded within prophage CP-933L8e-64242
NC_013941:4470932:447411944741194474610492Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein8e-64242
NC_007946:1119000:114075011407501141238489Escherichia coli UTI89, complete genomehypothetical protein8e-64242
NC_007946:4875997:489571848957184896206489Escherichia coli UTI89, complete genomehypothetical protein6e-64242
NC_009801:4882684:488608548860854886576492Escherichia coli E24377A, complete genomehypothetical protein4e-63239
NC_008253:334467:359213359213359701489Escherichia coli 536, complete genomehypothetical protein8e-63239
NC_013353:3669500:367272336727233673211489Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein9e-62235
AP010958:3669500:367272336727233673211489Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein9e-62235
NC_013716:5201097:521980552198055220293489Citrobacter rodentium ICC168, complete genomehypothetical protein2e-61234
NC_008253:4817864:483627048362704836704435Escherichia coli 536, complete genomehypothetical protein7e-54209
NC_009832:1946401:194733819473381947667330Serratia proteamaculans 568, complete genomehypothetical protein2e-24111
NC_013592:3263005:327744432774443277779336Dickeya dadantii Ech586, complete genomehypothetical protein2e-24111
NC_011750:4390000:441361544136154414037423Escherichia coli IAI39 chromosome, complete genomehypothetical protein2e-1995.1
NC_004431:4319152:434043343404334340855423Escherichia coli CFT073, complete genomehypothetical protein3e-1994.4
NC_008563:4707826:470782647078264708248423Escherichia coli APEC O1, complete genomehypothetical protein4e-1787
NC_014304:77715:777157771578026312Erwinia billingiae Eb661 plasmid pEB102, complete sequencehypothetical protein1e-1272.4