Pre_GI: BLASTP Hits

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Query: NC_017319:192482:207702 Shigella flexneri 2002017 plasmid pSFxv_1, complete sequence

Start: 207702, End: 207911, Length: 210

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007608:97092:110679110679110888210Shigella boydii Sb227 plasmid pSB4_227, complete sequenceputative regulator3e-34143
NC_011749:34056:533085330853517210Escherichia coli UMN026 plasmid p1ESCUM, complete sequencehemolysin expression-modulating protein hmo2e-33141
NC_010660:175200:190710190710190916207Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequencehypothetical protein2e-32137
NC_007607:87000:104623104623104811189Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceputative regulator3e-21100
NC_013716:5201097:523261552326155232827213Citrobacter rodentium ICC168, complete genomeputative haemolysin expression regulatory protein5e-1889.7
NC_015663:1869000:188221118822111882414204Enterobacter aerogenes KCTC 2190 chromosome, complete genomegene expression modulator3e-1787
NC_012880:1127997:115129411512941151497204Dickeya dadantii Ech703, complete genomeHemolysin expression modulating family protein7e-1785.9
NC_015567:1127780:115196511519651152168204Serratia sp. AS9 chromosome, complete genomehemolysin expression modulating family protein2e-1684.3
NC_015566:1127595:115178011517801151983204Serratia sp. AS12 chromosome, complete genomehemolysin expression modulating family protein2e-1684.3
NC_004344:589375:607573607573607776204Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis,hypothetical protein3e-1684
NC_016893:218376:224256224256224459204Wigglesworthia glossinidia endosymbiont of Glossina morsitanshemolysin expression modulating protein1e-1582
NC_004431:3409389:348569434856943485918225Escherichia coli CFT073, complete genomeHaemolysin expression modulating protein3e-1580.9
NC_007713:1:228222822494213Sodalis glossinidius str. 'morsitans' plasmid pSG1, completeputative regulatory protein2e-1167.8
NC_011751:3453683:350879835087983508938141Escherichia coli UMN026 chromosome, complete genome3e-0960.8
NC_004431:279868:285015285015285155141Escherichia coli CFT073, complete genomeHaemolysin expression modulating protein6e-0959.7
NC_015566:3269469:327287432728743273089216Serratia sp. AS12 chromosome, complete genomehemolysin expression modulating family protein3e-0753.9
NC_013941:3676146:370684037068403707028189Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein4e-0650.1
NC_013353:3627355:365865536586553658843189Escherichia coli O103:H2 str. 12009, complete genomeregulator Hha-homolog4e-0650.1
AP010958:3627355:365865536586553658843189Escherichia coli O103:H2 str. 12009 DNA, complete genomeputative regulator Hha-homolog4e-0650.1