Pre_GI: BLASTP Hits

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Query: NC_016822:3282654:3295885 Shigella sonnei 53G, complete genome

Start: 3295885, End: 3296190, Length: 306

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012759:2862807:287510528751052875530426Escherichia coli BW2952 chromosome, complete genomehypothetical protein9e-40161
NC_000913:2975659:298795729879572988382426Escherichia coli K12, complete genomehypothetical protein9e-40161
NC_010473:3069529:308182730818273082252426Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein9e-40161
AC_000091:2976293:298859129885912989016426Escherichia coli W3110 DNA, complete genomehypothetical protein9e-40161
NC_011751:3285646:329656232965623296987426Escherichia coli UMN026 chromosome, complete genomehypothetical protein3e-39160
NC_010468:906957:930343930343930768426Escherichia coli ATCC 8739, complete genomehypothetical protein5e-39159
NC_011748:3196173:320708732070873207512426Escherichia coli 55989, complete genomehypothetical protein5e-39159
CU928145:3196173:320708732070873207512426Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein5e-39159
NC_002655:3769643:377963637796363780073438Escherichia coli O157:H7 EDL933, complete genomehypothetical protein4e-38156
NC_013941:3540420:355041235504123550849438Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein4e-38156
CP002185:3167738:318003531800353180460426Escherichia coli W, complete genomeconserved hypothetical protein3e-38156
NC_002695:3702344:371233737123373712762426Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein3e-38156
CP002516:903241:925616925616926041426Escherichia coli KO11, complete genomehypothetical protein3e-38156
NC_011415:3217796:322871032287103229135426Escherichia coli SE11 chromosome, complete genomehypothetical protein3e-38156
NC_013008:3761467:377146037714603771885426Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein3e-38156
NC_013361:3867558:387847238784723878897426Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein3e-38156
NC_016902:903241:925616925616926041426Escherichia coli KO11FL chromosome, complete genomehypothetical protein3e-38156
CU928160:3030324:304123830412383041663426Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein3e-38156
NC_011741:3030324:304123830412383041663426Escherichia coli IAI1 chromosome, complete genomehypothetical protein3e-38156
NC_013364:3552284:356320435632043563629426Escherichia coli O111:H- str. 11128, complete genomehypothetical protein2e-37154
NC_013353:3474077:348527234852723485427156Escherichia coli O103:H2 str. 12009, complete genome1e-1168.2
AP010958:3474077:348527234852723485427156Escherichia coli O103:H2 str. 12009 DNA, complete genome1e-1168.2
NC_011750:3407500:341846934184693418738270Escherichia coli IAI39 chromosome, complete genome1e-0962
NC_013353:3474077:348499134849913485260270Escherichia coli O103:H2 str. 12009, complete genome2e-0960.8
AP010958:3474077:348499134849913485260270Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-0960.8