Pre_GI: BLASTP Hits

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Query: NC_016822:2201388:2236502 Shigella sonnei 53G, complete genome

Start: 2236502, End: 2237956, Length: 1455

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009800:2083465:2093664209366420951181455Escherichia coli HS, complete genomeAMP nucleosidase0974
NC_010468:1816359:1851826185182618532801455Escherichia coli ATCC 8739, complete genomeAMP nucleosidase0972
NC_000913:2042935:2053085205308520545391455Escherichia coli K12, complete genomeAMP nucleosidase0972
NC_010473:2119480:2144093214409321455471455Escherichia coli str. K-12 substr. DH10B, complete genomeAMP nucleosidase0972
AC_000091:2027648:2057198205719820586521455Escherichia coli W3110 DNA, complete genomeAMP nucleosidase0972
NC_011745:2209288:2232775223277522342291455Escherichia coli ED1a chromosome, complete genomeAMP nucleosidase0972
NC_012759:1920955:1945568194556819470221455Escherichia coli BW2952 chromosome, complete genomeAMP nucleosidase0972
NC_012947:1769438:1778146177814617796001455Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeAMP nucleosidase0972
NC_012967:1967675:1993060199306019945141455Escherichia coli B str. REL606 chromosome, complete genomeAMP nucleosidase0972
NC_011601:2139188:2144306214430621457601455Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeAMP nucleosidase0970
NC_009792:808332:8101268101268115801455Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein0907
NC_004631:948054:9544359544359558891455Salmonella enterica subsp. enterica serovar Typhi Ty2, completeAMP nucleosidase0884
NC_016832:948029:9543899543899558431455Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,AMP nucleosidase0884
NC_011094:2061000:2061677206167720631311455Salmonella enterica subsp. enterica serovar Schwarzengrund strAMP nucleosidase0884
NC_011274:2044000:2085852208585220873061455Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91AMP nucleosidase0884
NC_011294:2053991:2094719209471920961731455Salmonella enterica subsp. enterica serovar Enteritidis strAMP nucleosidase0884
NC_011205:2180598:2221732222173222231861455Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853AMP nucleosidase0883
NC_016831:947281:9472819472819487351455Salmonella enterica subsp. enterica serovar Gallinarum/pullorumAMP nucleosidase0882
NC_010067:892729:8950348950348964881455Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein0870
NC_013850:1753716:1778322177832217797761455Klebsiella variicola At-22 chromosome, complete genomeAMP nucleosidase0862
NC_016612:5231065:5238951523895152404051455Klebsiella oxytoca KCTC 1686 chromosome, complete genomeAMP nucleosidase0846
NC_015566:3417951:3420518342051834219781461Serratia sp. AS12 chromosome, complete genomeAMP nucleosidase0814
NC_012214:1650523:1654124165412416555811458Erwinia pyrifoliae Ep1/96, complete genomeAMP nucleosidase0755
NC_017168:3192817:3192817319281731944571641Yersinia pestis A1122 chromosome, complete genomeAMP nucleosidase0689
NC_010322:5349000:5397808539780853992711464Pseudomonas putida GB-1 chromosome, complete genomeAMP nucleosidase4e-146518
NC_003296:262118:2630882630882645691482Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completeAMP nucleosidase2e-122439
NC_014722:846084:8486038486038501081506Burkholderia rhizoxinica HKI 454, complete genomeAMP nucleosidase5e-111401
NC_012721:2021885:2038753203875320402761524Burkholderia glumae BGR1 chromosome 2, complete genomeAMP nucleosidase5e-109395
NC_020302:85821:1150211150211164421422Corynebacterium halotolerans YIM 70093 = DSM 44683, completeAMP nucleosidase2e-84313
NC_012590:37697:7009970099715621464Corynebacterium aurimucosum ATCC 700975, complete genomeAMP nucleosidase8e-84311
NC_000117:845141:883419883419884288870Chlamydia trachomatis D/UW-3/CX, complete genomeAMP nucleosidase1e-1688.2