Pre_GI: BLASTP Hits

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Query: NC_013716:1756545:1762982 Citrobacter rodentium ICC168, complete genome

Start: 1762982, End: 1763974, Length: 993

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011601:1077548:108638410863841087376993Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeT3SS secreted effector NleC-like protein3e-179627
NC_013941:1014386:102269310226931023685993Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeNon-LEE encoded type III effector C8e-179626
NC_013008:918215:930620930620931612993Escherichia coli O157:H7 str. TW14359 chromosome, complete genomenon-LEE-encoded type III effector8e-179626
NC_011353:921500:929027929027930019993Escherichia coli O157:H7 str. EC4115 chromosome, complete genomenon-LEE encoded type III effector C8e-179626
NC_002695:917509:925662925662926654993Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein8e-179626
NC_002655:919654:927313927313928305993Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded by prophage CP-933K8e-179626
NC_013364:2522888:253609225360922537078987Escherichia coli O111:H- str. 11128, complete genomeT3SS secreted effector NleC-like protein1e-178625
NC_013361:2169948:217100221710022171988987Escherichia coli O26:H11 str. 11368 chromosome, complete genomeT3SS effector NleC4e-178624
NC_013353:867869:875473875473875763291Escherichia coli O103:H2 str. 12009, complete genome4e-35149
AP010958:867869:875473875473875763291Escherichia coli O103:H2 str. 12009 DNA, complete genome4e-35149
NC_013353:2272919:228524722852472285510264Escherichia coli O103:H2 str. 12009, complete genome4e-35149
AP010958:2272919:228524722852472285510264Escherichia coli O103:H2 str. 12009 DNA, complete genome4e-35149