Pre_GI: BLASTP Hits

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Query: NC_011147:854730:867699 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 867699, End: 868538, Length: 840

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:854785:867754867754868593840Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCparatose synthase9e-149526
NC_004631:862002:875049875049875888840Salmonella enterica subsp. enterica serovar Typhi Ty2, completeparatose synthase4e-146517
NC_003198:2109775:212804021280402128879840Salmonella enterica subsp. enterica serovar Typhi str. CT18,paratose synthase4e-146517
NC_011294:2156425:217468721746872175526840Salmonella enterica subsp. enterica serovar Enteritidis strparatose synthase8e-145513
NC_011205:2283438:230170323017032302542840Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853paratose synthase8e-145513
NC_011274:2147427:216568921656892166528840Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91paratose synthase3e-144511
NC_016832:861956:875018875018875842825Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Paratose synthase2e-143508
NC_016831:854973:868038868038868862825Salmonella enterica subsp. enterica serovar Gallinarum/pullorumparatose synthase3e-142504
NC_004088:1196875:120664612066461207503858Yersinia pestis KIM, complete genomeCDP-paratose synthetase8e-60230
NC_008150:2878450:289994128999412900798858Yersinia pestis Antiqua, complete genomeparatose synthase8e-60230
NC_010465:3465351:348668734866873487544858Yersinia pseudotuberculosis YPIII, complete genomeNAD-dependent epimerase/dehydratase8e-60230
NC_006155:1191307:120310912031091203966858Yersinia pseudotuberculosis IP 32953, complete genomeparatose synthase8e-60230
NC_008149:1122693:113449611344961135353858Yersinia pestis Nepal516, complete genomeparatose synthase8e-60230
NC_010634:1175404:118517411851741186031858Yersinia pseudotuberculosis PB1/+, complete genomeNAD-dependent epimerase/dehydratase8e-60230
NC_010159:3033989:304581230458123046669858Yersinia pestis Angola, complete genomeCDP-paratose synthetase8e-60230
NC_009381:3094939:311641431164143117271858Yersinia pestis Pestoides F chromosome, complete genomeparatose synthase8e-60230
NC_009708:3411153:343245734324573433314858Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeCDP-paratose synthetase8e-60230
NC_014029:3501500:352267335226733523530858Yersinia pestis Z176003 chromosome, complete genomeparatose synthase8e-60230
NC_017168:2281040:229284322928432293700858Yersinia pestis A1122 chromosome, complete genomeparatose synthase8e-60230
NC_017265:3240379:326186232618623262719858Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,paratose synthase8e-60230
NC_005810:872672:884534884534885331798Yersinia pestis biovar Microtus str. 91001, complete genomeparatose synthase7e-55214
NC_011979:2352961:236050623605062361393888Geobacter sp. FRC-32, complete genomeNAD-dependent epimerase/dehydratase2e-40166
NC_014394:3036758:305718130571813058080900Gallionella capsiferriformans ES-2 chromosome, complete genomeNAD-dependent epimerase/dehydratase6e-39161
NC_007948:4176579:420400542040054204904900Polaromonas sp. JS666, complete genomeNAD-dependent epimerase/dehydratase2e-27122
NC_011080:2161696:218147021814702182351882Salmonella enterica subsp. enterica serovar Newport str. SL254,CDP-abequose synthase3e-25115
NC_011083:2200613:221761822176182218517900Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,CDP-abequose synthase1e-22107
NC_011149:2110861:212786421278642128763900Salmonella enterica subsp. enterica serovar Agona str. SL483,CDP-abequose synthase1e-22107
NC_003197:2152994:216999921699992170898900Salmonella typhimurium LT2, complete genomeCDP-abequose synthase1e-22107
NC_010102:861860:874901874901875800900Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-22107
NC_016810:2150709:216771421677142168613900Salmonella enterica subsp. enterica serovar Typhimurium strCDP-abequose synthase1e-22107
NC_016856:2204546:222155122215512222450900Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SCDP-abequose synthase1e-22107
NC_016857:2150709:216771421677142168613900Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74CDP-abequose synthase1e-22107
NC_016860:2148535:216554021655402166439900Salmonella enterica subsp. enterica serovar Typhimurium strCDP-abequose synthase1e-22107
NC_016863:2152739:216974421697442170643900Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1CDP-abequose synthase1e-22107
NC_017046:2150072:216707721670772167985909Salmonella enterica subsp. enterica serovar Typhimurium str. 798CDP-abequose synthase1e-22107
NC_011094:2172271:219154121915412192440900Salmonella enterica subsp. enterica serovar Schwarzengrund strCDP-abequose synthase2e-22106
NC_017082:2355221:237324923732492374187939Bradyrhizobium sp. S23321, complete genomeputative GDP-6-deoxy-D-lyxo-4-hexulose reductase1e-1480.5
NC_015577:3113907:313490931349093135772864Treponema azotonutricium ZAS-9 chromosome, complete genomeCDP-abequose synthase4e-1272
NC_012483:656397:661113661113662099987Acidobacterium capsulatum ATCC 51196, complete genomeputative GDP-6-deoxy-D-lyxo-4-hexulose reductase3e-1169.3
NC_015172:2628128:267061026706102671512903Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeNAD-dependent epimerase/dehydratase1e-0963.9
NC_006624:873525:877272877272878198927Thermococcus kodakarensis KOD1, complete genomeUDP-glucose 4-epimerase3e-0962.8
NC_015500:987641:996982996982997890909Treponema brennaborense DSM 12168 chromosome, complete genomeNAD-dependent epimerase/dehydratase4e-0962.4
NC_007759:2638992:265189026518902652834945Syntrophus aciditrophicus SB, complete genomeCDP-4-dehydro-6-deoxy-D-gulose 4-reductase5e-0858.5
NC_010525:421769:433575433575434537963Thermoproteus neutrophilus V24Sta, complete genomedTDP-glucose 4,6-dehydratase5e-0858.5
NC_013222:3060482:306616830661683067112945Robiginitalea biformata HTCC2501, complete genomeGDP-fucose synthetase6e-0858.2
NC_016776:4115889:411996141199614120860900Bacteroides fragilis 638R, complete genomeputative LPS biosynthesis DNTP-hexose dehydratase-epimerase8e-0857.8
NC_014652:1091610:110799611079961108907912Caldicellulosiruptor hydrothermalis 108 chromosome, complete1e-0757.4
NC_015958:815442:818843818843819778936Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genomeNAD-dependent epimerase/dehydratase2e-0756.6
NC_015634:359500:3829323829323839691038Bacillus coagulans 2-6 chromosome, complete genomeDTDP-glucose 4,6-dehydratase7e-0754.7
NC_018664:2638102:263810226381022639007906Clostridium acidurici 9a chromosome, complete genomeUDP-glucose 4-epimerase GalE1e-0653.9
NC_013161:2804228:281425428142542815162909Cyanothece sp. PCC 8802, complete genomeNAD-dependent epimerase/dehydratase2e-0653.5
NC_015942:1167785:118253711825371183442906Acidithiobacillus ferrivorans SS3 chromosome, complete genomeNAD-dependent epimerase/dehydratase2e-0653.5
NC_011969:3106500:312561431256143126537924Bacillus cereus Q1 chromosome, complete genomeudp-glucose 4-epimerase3e-0652.8
NC_014829:3964616:396707139670713968069999Bacillus cellulosilyticus DSM 2522 chromosome, complete genomedTDP-glucose 4,6-dehydratase4e-0652.4
NC_017200:3221508:324189332418933242816924Bacillus thuringiensis serovar finitimus YBT-020 chromosome,NAD-dependent epimerase/dehydratase family protein4e-0652
NC_011658:3144000:316345331634533164376924Bacillus cereus AH187 chromosome, complete genomeNAD dependent epimerase/dehydratase family superfamily5e-0652
NC_015666:1623790:164662216466221647545924Halopiger xanaduensis SH-6 chromosome, complete genomeUDP-glucose 4-epimerase6e-0651.6
NC_011725:3231859:325285832528583253781924Bacillus cereus B4264 chromosome, complete genomeNAD dependent epimerase/dehydratase superfamily1e-0550.8