Pre_GI: BLASTN Hits

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Query: NC_010673:205500 Borrelia hermsii DAH, complete genome

Start: 205500, End: 227599, Length: 22100

Host Lineage: Borrelia hermsii; Borrelia; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: This strain was isolated from a case of relapsing fever in western Washington, USA. Borrelia hermsii is the causative agent of tick-borne relapsing fever in the western United States and Canada. Borrelia then multiplies rapidly, causing a generalized infection throughout the tick. While feeding, the tick passes the organism into a mammalian host through its infectious saliva. Relapsing fever is characterized by a period of chills, fever, headache, and malaise, an asymptomatic period, followed by another episode of symptoms. This cycle of relapsing is due to changes in the surface proteins of Borrelia, which allow it to avoid detection and removal by the host immune system. This antigenic variation is the result of homologous recombination of silent proteins into an expressed locus, causing partial or complete replacement of one serotype with another. These plasmids carry genes involved in antigenic variation and pathogenicity.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_015437:2164997*2164997218559920603Selenomonas sputigena ATCC 35185 chromosome, complete genome5e-20107BLASTN svgBLASTP svg
NC_007645:6407370*6407370643016222793Hahella chejuensis KCTC 2396, complete genome5e-20107BLASTN svgBLASTP svg
NC_008260:2340824*2340824238894248119Alcanivorax borkumensis SK2, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_015436:1758257*1758257178406425808Spirochaeta coccoides DSM 17374 chromosome, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_002971:1545924*1545924156802322100Coxiella burnetii RSA 493, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_009727:357206*35720637934622141Coxiella burnetii Dugway 7E9-12, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_013132:782846*78284680287020025Chitinophaga pinensis DSM 2588, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_000919:74687574687576682819954Treponema pallidum subsp. pallidum str. Nichols, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_010741:74535774535776827622920Treponema pallidum subsp. pallidum SS14, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_014166:228293*22829324752319231Arcobacter nitrofigilis DSM 7299 chromosome, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_014166:2319447*2319447234446925023Arcobacter nitrofigilis DSM 7299 chromosome, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_014166:2649444*2649444267257623133Arcobacter nitrofigilis DSM 7299 chromosome, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_014166:3072703*3072703310034527643Arcobacter nitrofigilis DSM 7299 chromosome, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_015714:741044*74104476557024527Treponema paraluiscuniculi Cuniculi A chromosome, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_015497:37940003794000381999125992Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_015152:2528399*2528399254787419476Spirochaeta sp. Buddy chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_007880:50840750840753094422538Francisella tularensis subsp. holarctica, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_007912:909112*90911293451825407Saccharophagus degradans 2-40, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_007963:11908471190847124782656980Chromohalobacter salexigens DSM 3043, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_008369:51499551499553466619672Francisella tularensis subsp. holarctica OSU18, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_013722:31174423117442314053923098Xanthomonas albilineans, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_000908:253979*25397927331819340Mycoplasma genitalium G37, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_014387:719245*71924574009920855Butyrivibrio proteoclasticus B316 chromosome 1, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_014935:918855*91885594271923865Nitratifractor saLSUginis DSM 16511 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NS_000191:782337*78233780392821592Uncultured Termite group 1 bacterium phylotype Rs-D17, complete3e-0971.9BLASTN svgBLASTP svg
NC_019904:3127945*3127945314866320719Echinicola vietnamensis DSM 17526 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_009465:90000*9000013018540186Candidatus Vesicomyosocius okutanii HA, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_006570:16259091625909164817822270Francisella tularensis subsp. tularensis Schu 4, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_008245:16257151625715164632420610Francisella tularensis subsp. tularensis FSC 198, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_008601:1560482*1560482160300942528Francisella tularensis subsp. novicida U112, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010677:35383935383937621022372Francisella tularensis subsp. mediasiatica FSC147, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_020054:4795000*4795000481909924100Fibrella aestuarina BUZ 2 drat genome4e-0867.9BLASTN svgBLASTP svg
NC_014306:64215264215266635524204Erwinia billingiae Eb661, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_006155:40620004062000408523223233Yersinia pseudotuberculosis IP 32953, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_008149:587689*58768961062122933Yersinia pestis Nepal516, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_010001:434803*43480346465129849Clostridium phytofermentans ISDg, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_015224:3892972*3892972393636443393Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,7e-0763.9BLASTN svgBLASTP svg
NC_014836:2325559*2325559234541319855Desulfurispirillum indicum S5 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014499:181000*18100019859917600Candidatus Sulcia muelleri CARI chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010376:606000*60600062469418695Finegoldia magna ATCC 29328, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007681:402773*40277342762724855Methanosphaera stadtmanae DSM 3091, complete genome3e-0661.9BLASTN svgBLASTP svg