Pre_GI: BLASTP Hits

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Query: NC_008261:967973:980233 Clostridium perfringens ATCC 13124, complete genome

Start: 980233, End: 981186, Length: 954

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003366:1013773:101856510185651019518954Clostridium perfringens str. 13, complete genomehypothetical protein3e-144511
NC_017098:986428:102378510237851024732948Spirochaeta africana DSM 8902 chromosome, complete genomehypothetical protein7e-24111
NC_019757:4739206:476161147616114762168558Cylindrospermum stagnale PCC 7417, complete genomeuncharacterized protein with SCP/PR1 domains2e-1996.7
NC_016048:1580352:1583348158334815846941347Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein2e-1893.6
NC_009925:1617414:163848816384881639192705Acaryochloris marina MBIC11017, complete genomehypothetical protein4e-1789
NC_010723:2231834:2237503223750322385551053Clostridium botulinum E3 str. Alaska E43, complete genomeYkwD protein9e-1787.8
NC_004557:2475030:249312024931202493731612Clostridium tetani E88, complete genometransporter3e-1685.9
NC_010674:2435241:2440074244007424410811008Clostridium botulinum B str. Eklund 17B, complete genomeYkwD protein4e-1685.5
NC_016593:3249767:3256003325600332572411239Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completehypothetical protein7e-1684.7
NC_009633:3429972:343284234328423433804963Alkaliphilus metalliredigens QYMF chromosome, complete genomeSCP-like extracellular protein7e-1684.7
NC_013192:1765981:178246517824651783061597Leptotrichia buccalis DSM 1135, complete genomeSCP-like extracellular4e-1479
NC_014915:3320768:3325816332581633270481233Geobacillus sp. Y412MC52 chromosome, complete genomeSCP-like extracellular6e-1375.1
NC_013411:3314799:3319847331984733210791233Geobacillus sp. Y412MC61, complete genomeSCP-like extracellular6e-1375.1
NC_004193:375416:4119484119484130811134Oceanobacillus iheyensis HTE831, complete genomehypothetical protein3e-1272.8
NC_015730:921735:9319249319249336301707Roseobacter litoralis Och 149 chromosome, complete genomeSCP-like protein1e-1171.2
NC_004557:691944:7116347116347131511518Clostridium tetani E88, complete genomeputative S-layer protein/internalin A-like/N-acetylmuramoyl-L-alanine amidase1e-1170.9
NC_014002:466994:4781764781764793541179Methanohalophilus mahii DSM 5219 chromosome, complete genomeSCP-like extracellular3e-1169.3
NC_008209:1385094:1395405139540513965801176Roseobacter denitrificans OCh 114, complete genomeSCP-like extracellular protein subfamily, putative9e-1167.8
NC_013791:1152500:1165916116591611672081293Bacillus pseudofirmus OF4 chromosome, complete genomecopper amine oxidase domain-containing protein5e-1065.5
NC_013526:567500:584388584388585200813Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomeSCP-like extracellular3e-0963.2
NC_014002:31293:425164251643451936Methanohalophilus mahii DSM 5219 chromosome, complete genomeSCP-like extracellular2e-0859.7
NC_010501:3448389:347324634732463474106861Pseudomonas putida W619, complete genomeSCP-like extracellular3e-0859.3
NC_015161:354000:356212356212356826615Deinococcus proteolyticus MRP chromosome, complete genomeSCP-like extracellular7e-0858.5
NC_016113:1143580:1165096116509611667451650Streptomyces cattleya NRRL 8057 plasmid pSCAT, complete sequencesigma-70 family RNA polymerase sigma factor9e-0857.8
NC_013174:2624365:2628607262860726297611155Jonesia denitrificans DSM 20603, complete genomeSCP-like extracellular3e-0756.2
NC_017243:1229597:125218112521811253062882Brachyspira intermedia PWS/A chromosome, complete genomehypothetical protein4e-0755.8
NC_007484:1694738:171340017134001714107708Nitrosococcus oceani ATCC 19707, complete genomehypothetical protein6e-0755.1
NC_020829:2022000:202546820254682026316849Pseudomonas denitrificans ATCC 13867, complete genomehypothetical protein2e-0653.1
NC_012225:787737:805816805816806262447Brachyspira hyodysenteriae WA1, complete genomeSCP-like extracellular protein3e-0653.1
NC_014219:999648:1009324100932410106191296Bacillus selenitireducens MLS10 chromosome, complete genomecopper amine oxidase domain protein6e-0652