Some Help

Query: NC_008150:3495851:3500590 Yersinia pestis Antiqua, complete genome

Start: 3500590, End: 3500748, Length: 159

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Isolated from a soil sample from the Republic of Congo. Causative agent of plague. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis consists of three biotypes or serovars, Antiqua, Mediavalis, and Orientalis, that are associated with three major pandemics throughout human history. pMT1 encodes a protein, murine toxin, that aids rat-to-human transmission by enhancing survival of the organism in the flea midgut. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.

Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia

SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009381:460358:476618476618476776159Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein1e-1375.1
NC_004088:3923804:392768939276893927847159Yersinia pestis KIM, complete genomehypothetical protein1e-1375.1
NC_017265:3790750:379305137930513793209159Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein1e-1375.1
NC_008149:587689:604222604222604380159Yersinia pestis Nepal516, complete genomehypothetical protein1e-1375.1
NC_003143:675622:692692692692692850159Yersinia pestis CO92, complete genomehypothetical protein1e-1375.1
NC_014618:690056:699861699861700007147Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein1e-0755.5
NC_010634:4001154:400645040064504006608159Yersinia pseudotuberculosis PB1/+, complete genomehypothetical protein1e-1375.1
NC_010465:660207:673010673010673168159Yersinia pseudotuberculosis YPIII, complete genomehypothetical protein5e-1372.8