Pre_GI: BLASTP Hits

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Query: NC_007607:87000:104009 Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequence

Start: 104009, End: 104221, Length: 213

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010488:48868:651626516265374213Escherichia coli SMS-3-5 plasmid pSMS35_130, complete sequenceIS1 transposase orfA9e-33138
NC_010498:1035406:105072010507201050932213Escherichia coli SMS-3-5, complete genomeIS1 transposase orfA9e-33138
NC_007946:1280508:129322912932291293441213Escherichia coli UTI89, complete genomehypothetical protein9e-33138
NC_010488:48868:518765187652088213Escherichia coli SMS-3-5 plasmid pSMS35_130, complete sequenceIS1 transposase orfA6e-32135
NC_010488:48868:566155661556827213Escherichia coli SMS-3-5 plasmid pSMS35_130, complete sequenceIS1 transposase orfA3e-31134
NC_010498:4856011:485652548565254856737213Escherichia coli SMS-3-5, complete genomeIS1 transposase orfA3e-23107
NC_008258:1750964:1765649176564917692093561Shigella flexneri 5 str. 8401, complete genome2e-23107
NC_007606:1515403:1526379152637915274011023Shigella dysenteriae Sd197, complete genomehypothetical protein5e-23106
NC_004741:2169877:2184286218428621901225837Shigella flexneri 2a str. 2457T, complete genome9e-23105
NC_008258:1750964:1760732176073217631942463Shigella flexneri 5 str. 8401, complete genome1e-22104
NC_004431:4270305:428387242838724284084213Escherichia coli CFT073, complete genomehypothetical protein4e-2199.8