Pre_GI: BLASTP Hits

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Query: NC_007606:3755155:3771929 Shigella dysenteriae Sd197, complete genome

Start: 3771929, End: 3772765, Length: 837

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004337:3590323:3746657374665737496292973Shigella flexneri 2a str. 301, complete genomehypothetical protein7e-146516
NC_010498:3988351:4013819401381940184684650Escherichia coli SMS-3-5, complete genomehaemagluttinin family protein2e-140498
NC_010468:111504:1115041115041165285025Escherichia coli ATCC 8739, complete genome3e-140498
NC_009800:3787320:3804828380482838098525025Escherichia coli HS, complete genomeputative haemagglutinin1e-139496
NC_012947:126596:1265961265961314464851Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeYadA domain protein6e-140496
NC_012967:3696877:3712991371299137178414851Escherichia coli B str. REL606 chromosome, complete genomeputative adhesin6e-140496
CU928145:4131924:4150188415018841550384851Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein; putative exported adhesin2e-137488
NC_011748:4131924:4150188415018841550384851Escherichia coli 55989, complete genomeconserved hypothetical protein; putative exported adhesin2e-137488
CP002516:119935:1199351199351247854851Escherichia coli KO11, complete genomeYadA domain-containing protein2e-135481
NC_009801:4073968:4091324409132440961744851Escherichia coli E24377A, complete genomeputative haemagglutinins/invasins protein2e-135481
CP002185:3964500:3981288398128839861384851Escherichia coli W, complete genomeputative hemagglutinins/invasins protein2e-135481
NC_011415:4006500:4023357402335740282074851Escherichia coli SE11 chromosome, complete genomeputative autotransporter2e-135481
NC_016902:119935:1199351199351247854851Escherichia coli KO11FL chromosome, complete genomeYadA domain-containing protein2e-135481
NC_015856:2488297:2517010251701025211464137Collimonas fungivorans Ter331 chromosome, complete genomehypothetical protein1e-35150
NC_014532:752807:7608027608027622321431Halomonas elongata DSM 2581, complete genomehaemagluttinin domain protein5e-34144
NC_014310:2017927:2017927201792720206832757Ralstonia solanacearum PSI07 megaplasmid, complete sequencesurface-exposed adhesin protein (fragment)2e-27122
NC_020829:3050817:3051698305169830558524155Pseudomonas denitrificans ATCC 13867, complete genomesurface protein1e-26120
NC_015382:266000:86748674110102337Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequenceYadA domain-containing protein4e-2099
NC_014752:1331447:13340871334087134527011184Neisseria lactamica ST-640, complete genomeadhesin4e-1995.1
NC_017501:1352752:1364923136492313667071785Neisseria meningitidis 8013, complete genomeautotransporter NhhA9e-1994.4
NC_015460:1687684:16912041691204170484113638Gallibacterium anatis UMN179 chromosome, complete genomeputative hemagglutinin2e-1892.8
NC_016043:1563505:1569042156904215760376996Taylorella asinigenitalis MCE3 chromosome, complete genomehypothetical protein1e-1790.9
NC_016043:1563505:1579019157901915838964878Taylorella asinigenitalis MCE3 chromosome, complete genomehypothetical protein1e-1687.4
NC_012913:56258:6298862988692906303Aggregatibacter aphrophilus NJ8700, complete genomeextracellular matrix protein adhesin A1e-1687
NC_010554:2789722:2811965281196528141902226Proteus mirabilis HI4320, complete genomeadhesin1e-1687
NC_010515:1678487:1715055171505517182733219Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceYadA domain protein2e-1686.7
NC_009076:2050621:2076401207640120799613561Burkholderia pseudomallei 1106a chromosome I, complete sequenceputative outer membrane protein1e-1584
NC_009714:727679:7354507354507400004551Campylobacter hominis ATCC BAA-381, complete genomeouter membrane protein1e-1583.6
NC_010519:1764261:1768676176867617758337158Haemophilus somnus 2336 chromosome, complete genomeYadA domain-containing protein6e-1581.6
NC_010067:3538169:3550652355065235547644113Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein6e-1478.2
NC_009714:1329573:1334692133469213404425751Campylobacter hominis ATCC BAA-381, complete genomeputative adhesin9e-1374.3
NC_008309:1827809:1832041183204118412779237Haemophilus somnus 129PT, complete genomepossible large adhesin1e-1273.6
NC_010519:445936:4505814505814604509870Haemophilus somnus 2336 chromosome, complete genomeYadA domain-containing protein3e-1272.8
NC_016043:1563505:1563505156350515665703066Taylorella asinigenitalis MCE3 chromosome, complete genomehypothetical protein3e-1272.4
NC_010519:1684901:1689542168954216960816540Haemophilus somnus 2336 chromosome, complete genomeYadA domain-containing protein4e-1272.4
NC_007509:71954:7932279322833023981Burkholderia sp. 383 chromosome 3, complete sequenceHaemaglutinin/autotransporter like protein8e-1270.9
NC_015856:4342500:4367510436751043689851476Collimonas fungivorans Ter331 chromosome, complete genomehemagluttinin motif protein1e-1170.5
NC_008309:385592:39411539411540683112717Haemophilus somnus 129PT, complete genomepossible large adhesin2e-1169.7
NC_008309:502983:5091635091635177188556Haemophilus somnus 129PT, complete genomepossible cell-surface large adhesin4e-1168.9
NC_008391:699222:7057837057837073931611Burkholderia cepacia AMMD chromosome 2, complete sequenceYadA C-terminal domain protein5e-1168.6
NC_010519:1165418:11692911169291118054011250Haemophilus somnus 2336 chromosome, complete genomeYadA domain-containing protein4e-1168.6
NC_008309:1200245:12035001203500121471311214Haemophilus somnus 129PT, complete genomepossible large adhesin6e-1168.2
NC_014752:1363562:1376242137624213860219780Neisseria lactamica ST-640, complete genomeadhesin1e-1067
NC_015382:172213:1851321851321913236192Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequenceYadA domain-containing protein1e-0963.9
NC_010519:796229:80439580439581541911025Haemophilus somnus 2336 chromosome, complete genomeYadA domain-containing protein1e-0963.9
NC_013515:183088:2065892065892096333045Streptobacillus moniliformis DSM 12112, complete genomeYadA domain protein2e-0963.5
NC_008309:1851189:1858163185816318669078745Haemophilus somnus 129PT, complete genomepossible large adhesin2e-0963.2
NC_013515:1623407:1640689164068916438863198Streptobacillus moniliformis DSM 12112, complete genomeYadA domain protein6e-0961.6
NC_012721:182965:1959981959981973171320Burkholderia glumae BGR1 chromosome 2, complete genomeMembrane-anchored cell surface protein8e-0961.2
NC_013740:1218429:1272900127290012791036204Acidaminococcus fermentans DSM 20731, complete genomeS-layer domain protein1e-0860.8
NC_013515:1623407:1644131164413116495725442Streptobacillus moniliformis DSM 12112, complete genomeYadA domain protein1e-0860.8
NC_010519:2033980:2038316203831620465928277Haemophilus somnus 2336 chromosome, complete genomeYadA domain-containing protein1e-0860.5
NC_015376:2061990:2074478207447820790434566Burkholderia gladioli BSR3 chromosome chromosome 2, completeputative membrane-anchored cell surface protein2e-0859.7
NC_013515:1623407:1631515163151516333021788Streptobacillus moniliformis DSM 12112, complete genomeYadA domain protein4e-0858.9
NC_013515:183088:1877721877721914103639Streptobacillus moniliformis DSM 12112, complete genomeYadA domain protein5e-0858.5
NC_015376:903939:9296989296989332313534Burkholderia gladioli BSR3 chromosome chromosome 2, completehemagglutinin5e-0858.5
NC_015856:29338:4508245082468331752Collimonas fungivorans Ter331 chromosome, complete genomehypothetical protein7e-0858.2
NC_008309:842072:84713084713085889211763Haemophilus somnus 129PT, complete genomepossible large adhesin9e-0857.8
NC_007606:3755155:3769333376933337718402508Shigella dysenteriae Sd197, complete genomehypothetical protein8e-0857.8
NC_010519:1802294:18069921806992181876311772Haemophilus somnus 2336 chromosome, complete genomeYadA domain-containing protein7e-0857.8
NC_013515:1623407:1638694163869416404121719Streptobacillus moniliformis DSM 12112, complete genomeYadA domain protein1e-0757.4
NC_007435:1914375:1943828194382819456811854Burkholderia pseudomallei 1710b chromosome II, complete sequenceHep_Hag family1e-0757.4
NC_006351:101500:1052901052901072271938Burkholderia pseudomallei K96243 chromosome 2, complete sequencehypothetical protein1e-0757.4
NC_015382:266000:1245612456159923537Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequenceputative membrane-anchored cell surface protein1e-0757
NC_008309:1155218:1163918116391811726388721Haemophilus somnus 129PT, complete genomepossible large adhesin1e-0757
NC_006350:1938631:1982643198264319874634821Burkholderia pseudomallei K96243 chromosome 1, complete sequencehypothetical protein2e-0756.6
NC_010515:1618093:16314151631415164257111157Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceYadA domain protein2e-0756.6
NC_007434:2386036:2397108239710824020724965Burkholderia pseudomallei 1710b chromosome I, complete sequenceHep_Hag family protein/haemagluttinin motif family protein/YadA-like domain protein2e-0756.6
NC_008309:1289370:12937551293755130441910665Haemophilus somnus 129PT, complete genomepossible large adhesin3e-0756.2
NC_008061:190287:1902871902871984738187Burkholderia cenocepacia AU 1054 chromosome 2, complete sequenceHaemagluttinin motif protein4e-0755.5
NC_010515:2111691:2111691211169121201358445Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceHaemagluttinin domain protein4e-0755.5
NC_010519:416658:4224664224664324139948Haemophilus somnus 2336 chromosome, complete genomeYadA domain-containing protein6e-0755.1
NC_012846:199365:2173712173712227285358Bartonella grahamii as4aup, complete genomesurface protein/Bartonella adhesin6e-0754.7
NC_016043:1563505:1576250157625015788052556Taylorella asinigenitalis MCE3 chromosome, complete genomehypothetical protein8e-0754.3
NC_009078:74954:106790106790107197408Burkholderia pseudomallei 1106a chromosome II, complete sequencehaemagluttinin family protein9e-0754.3
NC_009075:92210:126647126647127054408Burkholderia pseudomallei 668 chromosome II, complete sequencehypothetical protein9e-0754.3
NC_013515:1623407:1633582163358216375834002Streptobacillus moniliformis DSM 12112, complete genomeYadA domain protein2e-0653.1
NC_013515:183088:2122792122792152752997Streptobacillus moniliformis DSM 12112, complete genomeYadA domain protein3e-0652.8