Pre_GI: BLASTP Hits

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Query: NC_006856:95830:100618 Salmonella enterica subsp. enterica serovar Choleraesuis str

Start: 100618, End: 100866, Length: 249

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated from a 58-year old man with sepsis and has been shown to be resistant to ciprofloxacin and ceftriaxone. This organism also causes severe disease (swine paratyphoid) in pigs. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007941:11319:562635626356511249Escherichia coli UTI89 plasmid pUTI89, complete sequenceUV protection and mutation protein7e-40162
NC_003198:4453457:44737534473753450773033978Salmonella enterica subsp. enterica serovar Typhi str. CT18,7e-1475.9
NC_011147:2676972:268299426829942683227234Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein8e-1372.4
NC_006511:2677964:268745826874582687691234Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein8e-1372.4
NC_020260:312805:326018326018326251234Cronobacter sakazakii Sp291, complete genomedinI-like protein in retron EC672e-1270.9
NC_016810:2871689:288064028806402880873234Salmonella enterica subsp. enterica serovar Typhimurium strputative bacteriophage sos operon Tum protein3e-1270.5
NC_016857:2871689:288064028806402880873234Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74Prophage protein3e-1270.5
NC_017046:2869873:287938228793822879615234Salmonella enterica subsp. enterica serovar Typhimurium str. 798bacteriophage sos operon Tum protein3e-1270.5
NC_011149:2802199:281269128126912812924234Salmonella enterica subsp. enterica serovar Agona str. SL483,4e-1270.1
NC_007613:761234:769189769189769494306Shigella boydii Sb227, complete genomeputative damage-inducible protein4e-1167
NC_011742:2823000:282326328232632823568306Escherichia coli S88 chromosome, complete genomeDinI-like damage-inducible protein4e-1167
NC_016845:1773416:178164517816451781878234Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative DinI-like damage-inducible protein4e-1166.6
NC_012947:2898179:290549729054972905730234Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeDinI family protein4e-1166.6
NC_011601:846358:862220862220862453234Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeDNA-damage-inducible protein4e-1166.6
NC_017046:2756000:276260027626002762833234Salmonella enterica subsp. enterica serovar Typhimurium str. 798damage-inducible protein2e-0651.2
NC_016856:2812905:281706928170692817302234Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein2e-0651.2
NC_011080:2761403:276556727655672765800234Salmonella enterica subsp. enterica serovar Newport str. SL254,hypothetical protein2e-0651.2
NC_015761:1017301:101823310182331018466234Salmonella bongori NCTC 12419, complete genomephage damage-inducible protein3e-0650.8
NC_009648:3803622:382864238286423829124483Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative prophage protein5e-0649.7