Pre_GI Gene

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Host: NC_011147 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011147:2676972 Salmonella enterica subsp. enterica serovar Paratyphi A str

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
267697226787381767terminase subunitQuickGO ontologyBLASTP
267873826797811044capsid portal proteinQuickGO ontologyBLASTP
26798302680525696hypothetical proteinBLASTP
268054526816091065hypothetical proteinBLASTP
268160626826701065hypothetical proteinBLASTP
26826802682898219hypothetical proteinBLASTP
26829942683227234hypothetical proteinBLASTP
26832392683427189hypothetical proteinBLASTP
268359526859972403hypothetical proteinBLASTP
26859882686848861DNA adenine methylaseQuickGO ontologyBLASTP
26868452687429585exonucleaseQuickGO ontologyBLASTP
26874262687653228hypothetical proteinBLASTP
26876532687886234hypothetical proteinBLASTP
26879542688295342hypothetical proteinBLASTP
26882592688459201hypothetical proteinBLASTP
26884672688976510phage regulatory proteinQuickGO ontologyBLASTP
26890092689251243phage regulatory proteinQuickGO ontologyBLASTP
26893682690000633phage repressor protein cIQuickGO ontologyBLASTP
269000426910291026phage integraseQuickGO ontologyBLASTP
26915622692320759bacteriophage integraseQuickGO ontologyBLASTP
269314626942641119hypothetical proteinBLASTP