Pre_GI: BLASTP Hits

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Query: NC_004578:5623783:5636765 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 5636765, End: 5641774, Length: 5010

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010694:614985:6149856149856199614977Erwinia tasmaniensis, complete genomeSimilar to Nematicidal protein 25e-67257
NC_012214:3502992:3519126351912635240904965Erwinia pyrifoliae Ep1/96, complete genomeNematicidal protein2e-56222
NC_013892:2108175:2155453215545321598414389Xenorhabdus bovienii SS-2004 chromosome, complete genomeNematicidal protein 27e-51204
NC_016830:5109953:5131208513120851361844977Pseudomonas fluorescens F113 chromosome, complete genomeYD repeat protein1e-42176
NC_016830:5109953:5116855511685551215794725Pseudomonas fluorescens F113 chromosome, complete genomeYD repeat protein1e-40170
NC_009668:46010:5085650856559525097Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceYD repeat-containing protein2e-39166
NC_010322:1623599:1627462162746216325315070Pseudomonas putida GB-1 chromosome, complete genomeYD repeat-containing protein2e-35152
NC_009512:4287605:4307156430715643123275172Pseudomonas putida F1, complete genomeYD repeat protein7e-32140
NC_010501:1629107:1634063163406316390394977Pseudomonas putida W619, complete genomeYD repeat protein2e-31139
NC_014228:1712339:1716790171679017217544965Xenorhabdus nematophila ATCC 19061, complete genomeputative Nematicidal protein 25e-31137
NC_009783:1665610:1681367168136716860464680Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequencehypothetical protein1e-25119
NC_010506:4951500:4968117496811749693221206Shewanella woodyi ATCC 51908, complete genomehypothetical protein8e-20100
NC_005085:2457295:2462175246217524632871113Chromobacterium violaceum ATCC 12472, complete genomehypothetical protein2e-1999.4
NC_005085:2609934:2613466261346626145661101Chromobacterium violaceum ATCC 12472, complete genomehypothetical protein7e-1894.4
NC_005085:2609934:2628514262851426296831170Chromobacterium violaceum ATCC 12472, complete genomehypothetical protein3e-1792
NC_017986:1042642:1053283105328310571283846Pseudomonas putida ND6 chromosome, complete genomeYD repeat-/RHS repeat-containing protein8e-1687.4
NC_009512:4287605:4295234429523442990793846Pseudomonas putida F1, complete genomeYD repeat-containing protein1e-1587
NC_002947:4805060:481730448173044818098795Pseudomonas putida KT2440, complete genomehypothetical protein2e-1586.3
NC_013961:1246454:1259504125950412645945091Erwinia amylovora, complete genomeTeneurin-13e-1585.9
NC_010506:4951500:4969347496934749731503804Shewanella woodyi ATCC 51908, complete genomeYD repeat protein2e-1482.8
NC_011001:2517159:2525066252506625296134548Burkholderia cenocepacia J2315 chromosome 2, complete sequenceRHS-family protein5e-1378.2
NC_010067:4418000:4427234442723444311303897Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein7e-1377.8
NC_010694:2565580:2571660257166025767505091Erwinia tasmaniensis, complete genomeSimilar to the nematicidal protein 22e-1173.2
NC_008543:2035292:2041830204183020463144485Burkholderia cenocepacia HI2424 chromosome 2, complete sequenceYD repeat protein3e-1172.4
NC_008061:428501:4333524333524378364485Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencePAAR3e-1172.4
NC_018691:3525430:3546371354637135505164146Alcanivorax dieselolei B5 chromosome, complete genomeYD repeat protein1e-1070.1
NC_013971:1283942:1297034129703413021245091Erwinia amylovora ATCC 49946 chromosome, complete genomeRHS family protein1e-0967.4
NC_012214:2673058:2679038267903826841285091Erwinia pyrifoliae Ep1/96, complete genomeSimilar to the nematicidal protein 23e-0965.9
NC_010515:2358134:2362974236297423674374464Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceYD repeat protein4e-0862
NC_020209:1903830:1916957191695719206763720Pseudomonas poae RE*1-1-14, complete genomehypothetical protein1e-0760.8
NC_003552:2502689:2532488253248825338101323Methanosarcina acetivorans C2A, complete genomehypothetical protein2e-0759.7
NC_016791:3851454:38636243863624387462411001Clostridium sp. BNL1100 chromosome, complete genomeRHS repeat-associated core domain-containing protein2e-0759.7
NC_010995:1459831:1466825146682514685701746Cellvibrio japonicus Ueda107, complete genomeParB-like nuclease domain2e-0759.3
NC_015383:368500:3855573855573917366180Burkholderia gladioli BSR3 plasmid bgla_4p, complete sequenceRhs family protein2e-0759.3
NC_019892:865500:8770318770318821095079Singulisphaera acidiphila DSM 18658 chromosome, complete genomeRHS repeat-associated core domain-containing protein3e-0759.3
NC_014228:2883500:2914873291487329206655793Xenorhabdus nematophila ATCC 19061, complete genomeputative Rhs family protein3e-0758.9
NC_016830:3697173:3726607372660737292972691Pseudomonas fluorescens F113 chromosome, complete genomeyd repeat-containing protein4e-0758.5
NC_003155:210240:2298252298252369377113Streptomyces avermitilis MA-4680, complete genomelarge secreted protein6e-0758.2
NC_019892:1675000:1679123167912316858186696Singulisphaera acidiphila DSM 18658 chromosome, complete genomeRHS repeat-associated core domain-containing protein7e-0757.8
NC_003155:320979:3294523294523365467095Streptomyces avermitilis MA-4680, complete genomelarge secreted protein2e-0656.6