Query: NC_004129:2234851 Pseudomonas fluorescens Pf-5, complete genome
Start: 2234851, End: 2260099, Length: 25249
Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria
General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_004129:4333302 | 4333302 | 4351599 | 18298 | Pseudomonas fluorescens Pf-5, complete genome | 3e-114 | 420 | BLASTN svg | BLASTP svg |
NC_015733:1976752 | 1976752 | 2001341 | 24590 | Pseudomonas putida S16 chromosome, complete genome | 9e-93 | 349 | BLASTN svg | BLASTP svg |
NC_004129:2328491* | 2328491 | 2361230 | 32740 | Pseudomonas fluorescens Pf-5, complete genome | 1e-88 | 335 | BLASTN svg | BLASTP svg |
NC_004578:3817330 | 3817330 | 3842001 | 24672 | Pseudomonas syringae pv. tomato str. DC3000, complete genome | 6e-63 | 250 | BLASTN svg | BLASTP svg |
NC_005773:2177184 | 2177184 | 2200099 | 22916 | Pseudomonas syringae pv. phaseolicola 1448A, complete genome | 3e-34 | 155 | BLASTN svg | BLASTP svg |
NC_009512:4408325 | 4408325 | 4431842 | 23518 | Pseudomonas putida F1, complete genome | 2e-16 | 95.6 | BLASTN svg | BLASTP svg |
NC_007005:2149275* | 2149275 | 2170426 | 21152 | Pseudomonas syringae pv. syringae B728a, complete genome | 2e-13 | 85.7 | BLASTN svg | BLASTP svg |
NC_012724:3070386 | 3070386 | 3090076 | 19691 | Burkholderia glumae BGR1 chromosome 1, complete genome | 8e-13 | 83.8 | BLASTN svg | BLASTP svg |
NC_004129:5373886 | 5373886 | 5452599 | 78714 | Pseudomonas fluorescens Pf-5, complete genome | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_007005:1605000 | 1605000 | 1624916 | 19917 | Pseudomonas syringae pv. syringae B728a, complete genome | 1e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_014323:3976351 | 3976351 | 4038509 | 62159 | Herbaspirillum seropedicae SmR1 chromosome, complete genome | 5e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_007275:1 | 1 | 21125 | 21125 | Pseudomonas syringae pv. phaseolicola 1448A small plasmid, complete | 5e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_015947:568124 | 568124 | 593802 | 25679 | Burkholderia sp. JV3 chromosome, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_010622:2576110 | 2576110 | 2604236 | 28127 | Burkholderia phymatum STM815 chromosome 1, complete sequence | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_021150:1564229 | 1564229 | 1595034 | 30806 | Azotobacter vinelandii CA6, complete genome | 8e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_012560:1564500 | 1564500 | 1593800 | 29301 | Azotobacter vinelandii DJ, complete genome | 8e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_008390:2018201 | 2018201 | 2042736 | 24536 | Burkholderia cepacia AMMD chromosome 1, complete sequence | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_004578:4432983 | 4432983 | 4457099 | 24117 | Pseudomonas syringae pv. tomato str. DC3000, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |