Pre_GI Gene

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Host: NC_004129 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004129:4333302 Pseudomonas fluorescens Pf-5, complete genome

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
433330243355752274oxidoreductase alpha molybdopterin subunitQuickGO ontologyBLASTP
43358274336720894hypothetical proteinBLASTP
43368534337290438transcriptional regulator AsnC familyQuickGO ontologyBLASTP
43375394338210672hypothetical proteinBLASTP
43390484339722675hypothetical proteinBLASTP
43398944340019126hypothetical protein
43413204341841522phage protein putativeQuickGO ontologyBLASTP
43418384342413576structural protein P5 putativeQuickGO ontologyBLASTP
434354143466303090host specificity protein J truncationQuickGO ontologyBLASTP
43466884347254567prophage LambdaSo tail assembly protein IQuickGO ontologyBLASTP
43478404348646807Sb46QuickGO ontologyBLASTP
43486434349527885probable phage proteinQuickGO ontologyBLASTP
43504114351133723hypothetical protein