Pre_GI: BLASTP Hits

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Query: NC_004061:498483:502034 Buchnera aphidicola str. Sg (Schizaphis graminum), complete genome

Start: 502034, End: 503842, Length: 1809

Host Lineage: Buchnera aphidicola; Buchnera; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is the symbiont of the aphid Schizaphis graminum and contains a large circular chromosome. Aphid endosymbiont. Almost all aphids contain maternally transmitted bacteriocyte cells, which themselves contain bacteria called Buchnera. The aphids live on a restricted diet (plant sap), rich in carbohydrates, but poor in nitrogenous or other essential compounds. It is believed that the Buchnera provide the essential nutrients the host lacks. Besides a nutritional co-dependence, due to a co-existence of millions of years, Buchnera have lost the ability to produce cell surface components such as lipopolysaccharides. This makes for an obligate endosymbiont relationship between host and Buchnera. Buchnera are prokaryotic cells which belong to the gamma-Proteobacteria, closely related to the Enterobacteriaceae family. Phylogenetic studies using 16S rRNA indicate that the symbiotic relationship was established around 200-250 million years ago. Since Buchnera are closely related to Escherichia coli and Haemophilus influenzae, comparative genomic studies can shed light on the evolutionary mechanisms of intracellular endosymbiosis as well as the different underlying molecular basis between organisms with parasitic behavior and symbionts.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017259:480656:4806564806564824641809Buchnera aphidicola str. Ua (Uroleucon ambrosiae) chromosome,exodeoxyribonuclease V 67 kDa polypeptide1e-112407
NC_010694:3055403:3053556305355630554061851Erwinia tasmaniensis, complete genomeExodeoxyribonuclease V alpha chain3e-70266
NC_007712:3382000:3399933339993334017921860Sodalis glossinidius str. 'morsitans', complete genomeexodeoxyribonuclease V alpha subunit6e-59229
NC_008253:2965573:2981289298128929831151827Escherichia coli 536, complete genomeexodeoxyribonuclease V alpha chain6e-57222
NC_013361:3823347:3839171383917138409971827Escherichia coli O26:H11 str. 11368 chromosome, complete genomeexonuclease V subunit alpha9e-57221
NC_011742:3057444:3072950307295030747761827Escherichia coli S88 chromosome, complete genomeexonuclease V subunit alpha1e-56221
NC_007946:3125577:3141071314107131428971827Escherichia coli UTI89, complete genomeexodeoxyribonuclease V alpha chain1e-56221
NC_011745:3197584:3213407321340732152331827Escherichia coli ED1a chromosome, complete genomeexonuclease V subunit alpha1e-56221
NC_007613:2699500:2713369271336927151951827Shigella boydii Sb227, complete genomeATP-dependent dsDNA/ssDNA exonuclease V subunit2e-56221
NC_010498:3023442:3039266303926630410921827Escherichia coli SMS-3-5, complete genomeexodeoxyribonuclease V, alpha subunit3e-56219
NC_004459:1794540:1794540179454017966542115Vibrio vulnificus CMCP6 chromosome I, complete sequenceATP-dependent exoDNAse alpha subunit1e-43178
NC_002663:564958:5936695936695956421974Pasteurella multocida subsp. multocida str. Pm70, complete genomeRecD7e-43176
NC_018691:3496420:3496420349642034983661947Alcanivorax dieselolei B5 chromosome, complete genomeExodeoxyribonuclease V alpha chain5e-39162
NC_011206:2512667:2519649251964925216011953Acidithiobacillus ferrooxidans ATCC 53993, complete genomeexodeoxyribonuclease V, alpha subunit1e-33145
NC_008639:1573971:1590428159042815921731746Chlorobium phaeobacteroides DSM 266, complete genomeexodeoxyribonuclease V, alpha subunit2e-32141
NC_010803:1436397:1452865145286514546311767Chlorobium limicola DSM 245, complete genomeexodeoxyribonuclease V, alpha subunit4e-32139
NC_019940:2546500:2565827256582725677221896Thioflavicoccus mobilis 8321 chromosome, complete genomeexodeoxyribonuclease V subunit alpha8e-32139
NC_018645:4945698:4951424495142449534392016Desulfobacula toluolica Tol2, complete genomeexodeoxyribonuclease V subunit alpha1e-31138
NC_015740:3678342:3676216367621636783452130Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeexodeoxyribonuclease V subunit alpha5e-30132
NC_014924:3334386:3352228335222833541021875Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeexodeoxyribonuclease V, alpha subunit4e-21103
NC_012791:4794362:4818231481823148203572127Variovorax paradoxus S110 chromosome 1, complete genomeexodeoxyribonuclease V, alpha subunit3e-1997.1
NC_017271:4852351:4871059487105948733682310Xanthomonas campestris pv. raphani 756C chromosome, completeexodeoxyribonuclease V subunit alpha4e-1996.7
NC_010688:4991410:5009134500913450113682235Xanthomonas campestris pv. campestris, complete genomeexodeoxyribonuclease V alpha chain3e-1894
NC_003902:4989855:5006813500681350090502238Xanthomonas campestris pv. campestris str. ATCC 33913, completeexodeoxyribonuclease V alpha chain2e-1790.9
NC_007086:5064053:5079498507949850817352238Xanthomonas campestris pv. campestris str. 8004, complete genomeexodeoxyribonuclease V alpha chain2e-1790.9
NC_013851:3478153:3493536349353634957582223Allochromatium vinosum DSM 180 chromosome, complete genomeexodeoxyribonuclease V, alpha subunit2e-1377.8
NC_014500:2479814:2498288249828825003332046Dickeya dadantii 3937 chromosome, complete genomeexonuclease V (RecBCD complex), subunit alpha3e-1377
NC_015573:776209:7777177777177798042088Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomehelicase, RecD/TraA family1e-1172
NC_014833:2988814:2995209299520929974672259Ruminococcus albus 7 chromosome, complete genomehelicase, RecD/TraA family3e-0963.9
NC_015713:2453409:2463825246382524652491425Simkania negevensis Z chromosome gsn.131, complete genomeexodeoxyribonuclease V subunit alpha3e-0963.9
NC_009922:2721343:2731601273160127338472247Alkaliphilus oremlandii OhILAs, complete genomehelicase, RecD/TraA family1e-0862
NC_009495:183767:2021422021422043762235Clostridium botulinum A str. ATCC 3502 chromosome, complete genomehelicase, RecD/TraA family2e-0860.8
NC_009633:760872:7692317692317714952265Alkaliphilus metalliredigens QYMF chromosome, complete genomerecombinase D3e-0757.8
NC_021182:4427468:4430951443095144331582208Clostridium pasteurianum BC1, complete genomehelicase, putative, RecD/TraA family1e-0655.5
NC_019697:1696000:1699454169945417017062253Chamaesiphon minutus PCC 6605, complete genomehelicase, putative, RecD/TraA family3e-0654.3
NC_018664:239000:2433912433912456162226Clostridium acidurici 9a chromosome, complete genomeRecD/TraA family helicase RecD7e-0652.8