Pre_GI: BLASTP Hits

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Query: NC_003366:1427785:1430168 Clostridium perfringens str. 13, complete genome

Start: 1430168, End: 1431010, Length: 843

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a type A isolate from the soil. It can establish gas gangrene in a murine experimental model. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021182:1245692:124668412466841247529846Clostridium pasteurianum BC1, complete genomecobalamin biosynthesis protein CbiK, Co2+ chelatase9e-69260
NC_017295:1507956:151630015163001517136837Clostridium acetobutylicum EA 2018 chromosome, complete genomeAnaerobic Cobalt chelatase, cbiK1e-66253
NC_015687:1508664:151848715184871519323837Clostridium acetobutylicum DSM 1731 chromosome, complete genomeanaerobic cobalt chelatase CbiK1e-66253
NC_003030:1510000:151688615168861517722837Clostridium acetobutylicum ATCC 824, complete genomeAnaerobic Cobalt chelatase, cbiK1e-66253
NC_008593:2250871:225427922542792255070792Clostridium novyi NT, complete genomeanaerobic cobalt chelatase5e-57221
NC_004557:749330:767134767134767937804Clostridium tetani E88, complete genomeanaerobic cobalt chelatase cbiK6e-55214
NC_014328:3482980:348603434860343486855822Clostridium ljungdahlii ATCC 49587 chromosome, complete genomesirohydrochlorin cobaltochelatase2e-54212
NC_013316:3863728:3878930387893038804081479Clostridium difficile R20291, complete genomesirohydrochlorin cobaltochelatase1e-50200
NC_009089:3998347:4013526401352640150041479Clostridium difficile 630, complete genomesirohydrochlorin cobaltochelatase1e-50199
NC_014376:869749:885384885384886181798Clostridium saccharolyticum WM1 chromosome, complete genomeSirohydrochlorin cobaltochelatase3e-48192
NC_010001:1702350:172742117274211728206786Clostridium phytofermentans ISDg, complete genomeanaerobic cobalt chelatase1e-47189
NC_013892:853366:859521859521860315795Xenorhabdus bovienii SS-2004 chromosome, complete genomeSirohydrochlorin cobaltochelatase2e-47189
NC_011149:2040396:206225520622552063049795Salmonella enterica subsp. enterica serovar Agona str. SL483,sirohydrochlorin cobaltochelatase2e-46186
NC_011094:2061000:208394320839432084737795Salmonella enterica subsp. enterica serovar Schwarzengrund strsirohydrochlorin cobaltochelatase3e-46185
NC_012962:1827000:183925818392581840052795Photorhabdus asymbiotica, complete genomesirohydrochlorin cobaltochelatase3e-45182
NC_014614:284005:311454311454312230777Clostridium sticklandii, complete genomeSirohydrochlorin cobaltochelatase1e-44179
NC_015275:3976631:398895239889523989749798Clostridium lentocellum DSM 5427 chromosome, complete genomeSirohydrochlorin cobaltochelatase5e-44177
NC_015737:879545:8900818900818917331653Clostridium sp. SY8519, complete genomehypothetical protein4e-36152
NC_014972:3688000:369503036950303695935906Desulfobulbus propionicus DSM 2032 chromosome, complete genomeanaerobic cobaltochelatase8e-36150
NC_010337:524605:540809540809541630822Heliobacterium modesticaldum Ice1, complete genomecobalt chelatase cbik7e-34144
NC_013192:107672:108934108934109701768Leptotrichia buccalis DSM 1135, complete genomeanaerobic cobalt chelatase4e-29128
NC_006138:225832:2287912287912298011011Desulfotalea psychrophila LSv54, complete genomecobalt chelatase, chain A2e-28126
NC_013165:2700978:2712696271269627139401245Slackia heliotrinireducens DSM 20476, complete genomecobalamin biosynthesis protein CbiK, Co2+ chelatase6e-27121
NC_011059:1391734:141094214109421411895954Prosthecochloris aestuarii DSM 271, complete genomeanaerobic cobalt chelatase2e-26119
NC_011768:3854455:386032538603253861095771Desulfatibacillum alkenivorans AK-01, complete genomeanaerobic cobalt chelatase1e-21103
NC_011883:1314624:132944613294461330228783Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,anaerobic cobalt chelatase5e-2098.2
NC_010001:2176394:219285721928572193663807Clostridium phytofermentans ISDg, complete genomeanaerobic cobalt chelatase1e-1583.6
NC_014166:2149984:216319521631952164013819Arcobacter nitrofigilis DSM 7299 chromosome, complete genomeanaerobic cobalt chelatase2e-0859.7