Pre_GI Gene

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Host: NC_013316 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013316:3863728 Clostridium difficile R20291, complete genome

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile R20291 was isolated in Stoke Mandeville Hospital, UK in 2006 and is closely related to the North American hypervirulent BI strains. Clostridium difficile, a Gram-positive, spore-forming anaerobic bacterium, is the leading cause of infectious diarrhea among patients in hospitals worldwide, causing C. difficile infection (CDI). An important nosocomial pathogen, it is frequently associated with antibiotic treatment and causes diseases ranging from antibiotic-associated diarrhea to life-threatening pseudomembraneous colitis.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
386372838649901263putative nucleotide pyrophosphataseQuickGO ontologyBLASTP
386505338663631311ABC transporter solute-binding proteinQuickGO ontologyBLASTP
38663883867248861ABC transporter permease proteinQuickGO ontologyBLASTP
38672923868161870ABC transporter permease proteinQuickGO ontologyBLASTP
386814538692151071ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
386967038697861175S ribosomal RNAQuickGO ontologyBLASTP
38698593872811295323S ribosomal RNAQuickGO ontologyBLASTP
38730663874690162516S ribosomal RNAQuickGO ontologyBLASTP
38747933875371579putative siroheme synthaseQuickGO ontologyBLASTP
38755243876489966delta-aminolevulinic acid dehydrataseQuickGO ontologyBLASTP
387650638780051500porphyrin biosynthesis protein includes uroporphyrinogen-III methyltransferase and uroporphyrinogen-III synthaseQuickGO ontologyBLASTP
38779953878900906porphobilinogen deaminaseQuickGO ontologyBLASTP
387893038804081479sirohydrochlorin cobaltochelataseQuickGO ontologyBLASTP
38804273881179753cobalt-precorrin-6a reductaseQuickGO ontologyBLASTP
38811763881901726cobalt-precorrin-3b c17-methyltransferaseQuickGO ontologyBLASTP
388189838830191122putative cobalamin biosynthesis proteinQuickGO ontologyBLASTP
38830033883755753precorrin-4 C11-methyltransferaseQuickGO ontologyBLASTP
38837483884323576putative cobalt-precorrin-6y C15-methyltransferaseQuickGO ontologyBLASTP
38843133884921609putative cobalt-precorrin-6y C5-methyltransferaseQuickGO ontologyBLASTP
388491838861441227putative cobalt-precorrin-6a synthase deacetylatingQuickGO ontologyBLASTP