Pre_GI: BLASTN Hits

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Query: NC_016582:93754 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 93754, End: 116099, Length: 22346

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_021177:17368541736854177659939746Streptomyces fulvissimus DSM 40593, complete genome2e-72281BLASTN svgBLASTP svg
NC_007777:49543064954306497563821333Frankia sp. CcI3, complete genome3e-55224BLASTN svgBLASTP svg
NC_014210:38179483817948384029722350Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,7e-53216BLASTN svgBLASTP svg
NC_003155:74539947453994748164227649Streptomyces avermitilis MA-4680, complete genome1e-51212BLASTN svgBLASTP svg
NC_015953:1581542*1581542160650824967Streptomyces sp. SirexAA-E chromosome, complete genome7e-47196BLASTN svgBLASTP svg
NC_010572:6463939*6463939649468830750Streptomyces griseus subsp. griseus NBRC 13350, complete genome2e-44188BLASTN svgBLASTP svg
NC_009921:5202607*5202607524409941493Frankia sp. EAN1pec, complete genome2e-34155BLASTN svgBLASTP svg
NC_014391:13179571317957134023122275Micromonospora aurantiaca ATCC 27029 chromosome, complete genome6e-32147BLASTN svgBLASTP svg
NC_014168:14113101411310143315721848Segniliparus rotundus DSM 44985 chromosome, complete genome1e-26129BLASTN svgBLASTP svg
NC_015138:42467874246787426900822222Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete8e-22113BLASTN svgBLASTP svg
NC_015556:4074367*4074367410534530979Pseudomonas fulva 12-X chromosome, complete genome1e-20109BLASTN svgBLASTP svg
NC_007333:39579395797952139943Thermobifida fusca YX, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_013510:53091435309143533321324071Thermomonospora curvata DSM 43183, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_014039:12385001238500126344824949Propionibacterium acnes SK137 chromosome, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_006085:12345871234587126026325677Propionibacterium acnes KPA171202, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_004578:61386696138669616309624428Pseudomonas syringae pv. tomato str. DC3000, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_014623:79632387963238798828025043Stigmatella aurantiaca DW4/3-1 chromosome, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_002516:23067762306776232728720512Pseudomonas aeruginosa PAO1, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_004307:151854*15185417460922756Bifidobacterium longum NCC2705, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015067:1528984*1528984156187832895Bifidobacterium longum subsp. longum JCM 1217, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_012522:58476995847699587179324095Rhodococcus opacus B4, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_007494:621673*62167364650524833Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequence7e-0763.9BLASTN svgBLASTP svg
NC_015052:1569255*1569255159297923725Bifidobacterium longum subsp. infantis 157F, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014958:557208*55720858740830201Deinococcus maricopensis DSM 21211 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010816:170175*17017519460624432Bifidobacterium longum DJO10A, complete genome3e-0661.9BLASTN svgBLASTP svg