Query: NC_016582:93754 Streptomyces bingchenggensis BCW-1 chromosome, complete genome
Start: 93754, End: 116099, Length: 22346
Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria
General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_021177:1736854 | 1736854 | 1776599 | 39746 | Streptomyces fulvissimus DSM 40593, complete genome | 2e-72 | 281 | BLASTN svg | BLASTP svg |
NC_007777:4954306 | 4954306 | 4975638 | 21333 | Frankia sp. CcI3, complete genome | 3e-55 | 224 | BLASTN svg | BLASTP svg |
NC_014210:3817948 | 3817948 | 3840297 | 22350 | Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome, | 7e-53 | 216 | BLASTN svg | BLASTP svg |
NC_003155:7453994 | 7453994 | 7481642 | 27649 | Streptomyces avermitilis MA-4680, complete genome | 1e-51 | 212 | BLASTN svg | BLASTP svg |
NC_015953:1581542* | 1581542 | 1606508 | 24967 | Streptomyces sp. SirexAA-E chromosome, complete genome | 7e-47 | 196 | BLASTN svg | BLASTP svg |
NC_010572:6463939* | 6463939 | 6494688 | 30750 | Streptomyces griseus subsp. griseus NBRC 13350, complete genome | 2e-44 | 188 | BLASTN svg | BLASTP svg |
NC_009921:5202607* | 5202607 | 5244099 | 41493 | Frankia sp. EAN1pec, complete genome | 2e-34 | 155 | BLASTN svg | BLASTP svg |
NC_014391:1317957 | 1317957 | 1340231 | 22275 | Micromonospora aurantiaca ATCC 27029 chromosome, complete genome | 6e-32 | 147 | BLASTN svg | BLASTP svg |
NC_014168:1411310 | 1411310 | 1433157 | 21848 | Segniliparus rotundus DSM 44985 chromosome, complete genome | 1e-26 | 129 | BLASTN svg | BLASTP svg |
NC_015138:4246787 | 4246787 | 4269008 | 22222 | Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete | 8e-22 | 113 | BLASTN svg | BLASTP svg |
NC_015556:4074367* | 4074367 | 4105345 | 30979 | Pseudomonas fulva 12-X chromosome, complete genome | 1e-20 | 109 | BLASTN svg | BLASTP svg |
NC_007333:39579 | 39579 | 79521 | 39943 | Thermobifida fusca YX, complete genome | 5e-17 | 97.6 | BLASTN svg | BLASTP svg |
NC_013510:5309143 | 5309143 | 5333213 | 24071 | Thermomonospora curvata DSM 43183, complete genome | 2e-16 | 95.6 | BLASTN svg | BLASTP svg |
NC_014039:1238500 | 1238500 | 1263448 | 24949 | Propionibacterium acnes SK137 chromosome, complete genome | 1e-14 | 89.7 | BLASTN svg | BLASTP svg |
NC_006085:1234587 | 1234587 | 1260263 | 25677 | Propionibacterium acnes KPA171202, complete genome | 1e-14 | 89.7 | BLASTN svg | BLASTP svg |
NC_004578:6138669 | 6138669 | 6163096 | 24428 | Pseudomonas syringae pv. tomato str. DC3000, complete genome | 7e-13 | 83.8 | BLASTN svg | BLASTP svg |
NC_014623:7963238 | 7963238 | 7988280 | 25043 | Stigmatella aurantiaca DW4/3-1 chromosome, complete genome | 7e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_002516:2306776 | 2306776 | 2327287 | 20512 | Pseudomonas aeruginosa PAO1, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_004307:151854* | 151854 | 174609 | 22756 | Bifidobacterium longum NCC2705, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_015067:1528984* | 1528984 | 1561878 | 32895 | Bifidobacterium longum subsp. longum JCM 1217, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_012522:5847699 | 5847699 | 5871793 | 24095 | Rhodococcus opacus B4, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_007494:621673* | 621673 | 646505 | 24833 | Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequence | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_015052:1569255* | 1569255 | 1592979 | 23725 | Bifidobacterium longum subsp. infantis 157F, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_014958:557208* | 557208 | 587408 | 30201 | Deinococcus maricopensis DSM 21211 chromosome, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_010816:170175* | 170175 | 194606 | 24432 | Bifidobacterium longum DJO10A, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |