Pre_GI: BLASTN Hits

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Query: NC_011987:362997 Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence

Start: 362997, End: 390499, Length: 27503

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain has been developed for worldwide commercial use to control crown gall. This species is used commercially to control crown gall, a tumorogenic plant disease caused by the ubiquitous soil-borne pathogen Agrobacterium tumefaciens, which affects susceptible woody plants worldwide. The pathogen is responsible for nursery and orchard losses among stone fruit trees, grapes, apples, pears, nut trees, caneberries, clematis, hops, kiwifruit, persimmons, roses and many ornamental annuals, trees and shrubs. Infected plants are usually weakened and unproductive due to their damaged root system.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_011987:53760537608309929340Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence04044BLASTN svgBLASTP svg
NC_011004:11748131174813119811023298Rhodopseudomonas palustris TIE-1, complete genome7e-72280BLASTN svgBLASTP svg
NC_003064:22535225354830925775Agrobacterium tumefaciens str. C58 plasmid AT, complete sequence1e-36163BLASTN svgBLASTP svg
NC_003306:22228222284809925872Agrobacterium tumefaciens str. C58 plasmid AT, complete sequence1e-36163BLASTN svgBLASTP svg
NC_007964:32882532882536913940315Nitrobacter hamburgensis X14, complete genome7e-35157BLASTN svgBLASTP svg
NC_010338:58800058800061124723248Caulobacter sp. K31, complete genome6e-23117BLASTN svgBLASTP svg
NC_007958:23706192370619240281732199Rhodopseudomonas palustris BisB5, complete genome4e-21111BLASTN svgBLASTP svg
NC_011004:24577782457778249046532688Rhodopseudomonas palustris TIE-1, complete genome4e-21111BLASTN svgBLASTP svg
NC_010338:4530403*4530403455419223790Caulobacter sp. K31, complete genome2e-20109BLASTN svgBLASTP svg
NC_010338:2443765*2443765246613122367Caulobacter sp. K31, complete genome2e-20109BLASTN svgBLASTP svg
NC_003063:13587381358738137982321086Agrobacterium tumefaciens str. C58 chromosome linear, complete4e-1591.7BLASTN svgBLASTP svg
NC_003305:69381069381071549621687Agrobacterium tumefaciens str. C58 chromosome linear, complete4e-1591.7BLASTN svgBLASTP svg
NC_014923:59405005940500596642625927Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, complete6e-1487.7BLASTN svgBLASTP svg
NC_015675:64934446493444653829644853Mesorhizobium opportunistum WSM2075 chromosome, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_019973:58695005869500589538625887Mesorhizobium australicum WSM2073, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_011004:2507566*2507566253137523810Rhodopseudomonas palustris TIE-1, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_011662:1160887*1160887119009929213Thauera sp. MZ1T, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_009720:50790485079048510209923052Xanthobacter autotrophicus Py2, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_007958:2423335*2423335244565022316Rhodopseudomonas palustris BisB5, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_004463:17178901717890174815230263Bradyrhizobium japonicum USDA 110, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_011757:39881*398817409934219Methylobacterium chloromethanicum CM4, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014217:45505444550544458915738614Starkeya novella DSM 506 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_014664:15609261560926158164220717Rhodomicrobium vannielii ATCC 17100 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_012856:10800001080000110535625357Ralstonia pickettii 12D chromosome 1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010505:12647581264758129672831971Methylobacterium radiotolerans JCM 2831, complete genome3e-0661.9BLASTN svgBLASTP svg