Query: NC_010572:4181403 Streptomyces griseus subsp. griseus NBRC 13350, complete genome
Start: 4181403, End: 4206099, Length: 24697
Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria
General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_003155:4592000 | 4592000 | 4636144 | 44145 | Streptomyces avermitilis MA-4680, complete genome | 0 | 1505 | BLASTN svg | BLASTP svg |
NC_015957:10403997* | 10403997 | 10427201 | 23205 | Streptomyces violaceusniger Tu 4113 chromosome, complete genome | 0 | 1489 | BLASTN svg | BLASTP svg |
NC_018750:2118907 | 2118907 | 2143355 | 24449 | Streptomyces venezuelae ATCC 10712, complete genome | 0 | 1088 | BLASTN svg | BLASTP svg |
NC_021177:3997727* | 3997727 | 4019254 | 21528 | Streptomyces fulvissimus DSM 40593, complete genome | 1e-178 | 634 | BLASTN svg | BLASTP svg |
NC_010572:3925803* | 3925803 | 3956287 | 30485 | Streptomyces griseus subsp. griseus NBRC 13350, complete genome | 2e-173 | 617 | BLASTN svg | BLASTP svg |
NC_021177:4258102* | 4258102 | 4279581 | 21480 | Streptomyces fulvissimus DSM 40593, complete genome | 2e-96 | 361 | BLASTN svg | BLASTP svg |
NC_021177:4221309* | 4221309 | 4249408 | 28100 | Streptomyces fulvissimus DSM 40593, complete genome | 2e-66 | 262 | BLASTN svg | BLASTP svg |
NC_021177:2034722 | 2034722 | 2058510 | 23789 | Streptomyces fulvissimus DSM 40593, complete genome | 6e-60 | 240 | BLASTN svg | BLASTP svg |
NC_018750:2696000* | 2696000 | 2713599 | 17600 | Streptomyces venezuelae ATCC 10712, complete genome | 6e-60 | 240 | BLASTN svg | BLASTP svg |
NC_003888:5042283* | 5042283 | 5087561 | 45279 | Streptomyces coelicolor A3(2), complete genome | 1e-54 | 222 | BLASTN svg | BLASTP svg |
NC_003155:4906639 | 4906639 | 4931780 | 25142 | Streptomyces avermitilis MA-4680, complete genome | 1e-39 | 172 | BLASTN svg | BLASTP svg |
NC_003888:3602753 | 3602753 | 3626462 | 23710 | Streptomyces coelicolor A3(2), complete genome | 4e-36 | 161 | BLASTN svg | BLASTP svg |
NC_003888:5790104* | 5790104 | 5820643 | 30540 | Streptomyces coelicolor A3(2), complete genome | 2e-35 | 159 | BLASTN svg | BLASTP svg |
NC_019673:189487* | 189487 | 212103 | 22617 | Saccharothrix espanaensis DSM 44229 complete genome | 9e-25 | 123 | BLASTN svg | BLASTP svg |
NC_010572:3363830* | 3363830 | 3421214 | 57385 | Streptomyces griseus subsp. griseus NBRC 13350, complete genome | 6e-23 | 117 | BLASTN svg | BLASTP svg |
NC_013947:373862* | 373862 | 401224 | 27363 | Stackebrandtia nassauensis DSM 44728 chromosome, complete genome | 8e-16 | 93.7 | BLASTN svg | BLASTP svg |
NC_013174:309943* | 309943 | 349953 | 40011 | Jonesia denitrificans DSM 20603, complete genome | 3e-15 | 91.7 | BLASTN svg | BLASTP svg |
NC_013235:508585* | 508585 | 537296 | 28712 | Nakamurella multipartita DSM 44233, complete genome | 1e-14 | 89.7 | BLASTN svg | BLASTP svg |
NC_015953:3456535 | 3456535 | 3506197 | 49663 | Streptomyces sp. SirexAA-E chromosome, complete genome | 5e-14 | 87.7 | BLASTN svg | BLASTP svg |
NC_014830:335380* | 335380 | 373393 | 38014 | Intrasporangium calvum DSM 43043 chromosome, complete genome | 8e-13 | 83.8 | BLASTN svg | BLASTP svg |
NC_013131:621366* | 621366 | 644797 | 23432 | Catenulispora acidiphila DSM 44928, complete genome | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_013510:170199* | 170199 | 205173 | 34975 | Thermomonospora curvata DSM 43183, complete genome | 1e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_007777:461500* | 461500 | 485805 | 24306 | Frankia sp. CcI3, complete genome | 5e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_008278:874015* | 874015 | 901229 | 27215 | Frankia alni ACN14a, complete genome | 5e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_014391:6848475* | 6848475 | 6868362 | 19888 | Micromonospora aurantiaca ATCC 27029 chromosome, complete genome | 5e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_014815:6779538* | 6779538 | 6802553 | 23016 | Micromonospora sp. L5 chromosome, complete genome | 5e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_018720:1336839* | 1336839 | 1371421 | 34583 | Bifidobacterium asteroides PRL2011 chromosome, complete genome | 8e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_014168:709036* | 709036 | 734931 | 25896 | Segniliparus rotundus DSM 44985 chromosome, complete genome | 8e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_011567:204772* | 204772 | 226232 | 21461 | Anoxybacillus flavithermus WK1, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_011567:388358* | 388358 | 416780 | 28423 | Anoxybacillus flavithermus WK1, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_015757:4680* | 4680 | 28774 | 24095 | Sulfobacillus acidophilus TPY chromosome, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_015978:996933* | 996933 | 1021848 | 24916 | Lactobacillus sanfranciscensis TMW 1.1304 chromosome, complete | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_007929:473500* | 473500 | 499639 | 26140 | Lactobacillus salivarius subsp. salivarius UCC118, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_007929:210088* | 210088 | 238624 | 28537 | Lactobacillus salivarius subsp. salivarius UCC118, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_015957:639774* | 639774 | 666502 | 26729 | Streptomyces violaceusniger Tu 4113 chromosome, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_015957:10505870 | 10505870 | 10528082 | 22213 | Streptomyces violaceusniger Tu 4113 chromosome, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_010571:4483500* | 4483500 | 4510599 | 27100 | Opitutus terrae PB90-1, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |